Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03593 ATGGCACGAAGATCCATACCGATCCTCAAACATCTCTTATCAACCCGATCTCAATCCGAACCATTCAATTCCACCTTCAAACGATCCGTAACCTATATGCACCGTCCCGGTGACGGAACACCACGTCCAGTTACCTTAATCCCCGGCGATGGGATCGGACCACTTGTAACCGGTGCCGTTGAACAAGTCATGGAAGCGATGCACGCGCCTGTTTATTTCGAGAAATTTATTGTTCATGGTGATATGAAAGCTGTTCCTACCGAAGTTCTTGAATCGATCCGTAAGAATAAGGTTTGTCTTAAAGGTGGATTGATTACTCCTATGGGTGGTGGTGTTAGTTCTCTTAATGTTCAGCTTAGGAAAGAGCTTGATCTATATGCTTCTCTTGTTAATTGCTTTAATCTTCCTGGTTTGTCTACGAGACATGATAATGTTGATATTGTTGTTATTCGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTTCCCGGCGTCGTCGAAAGTCTTAAGGTGATTACGAAGTTCTGTTCTGAGCGCATTGCTAAATATGCATTCGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCGGATGGTTTGTTCTTGGAATCTTGTCGAGAGGTTGCCACCAAGTATCCTGGcattaaatataatgaaattattGTGGATAATTGCTGCATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTTACCCCAAATTTGTACGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTTATGCCAGGAGGTAATGTTGGGGCTGAGCACGCAATTTTTGAGCAGGGTGCTTCAGCTGGAAATGTTGGTAATGACAAAGTAGCAGCACAAAAGACAGCCAACCCAGTGGCACTCCTTCTCTCATCAGCTATGATGCTCAGGCATCTCCAATTTCCCGCATTTGCTGACCGTTTGGAAGTTGCTGTTGAAAAAGTCATTCTAGAGGGCAAGTATCGGACAAAGGATCTTGGGGGGACAAGCACCACGCAAGAAGTTGTCGATGCAGTAATAGATGCTTTAGATTGA 1116 0.4382 MARRSIPILKHLLSTRSQSEPFNSTFKRSVTYMHRPGDGTPRPVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFIVHGDMKAVPTEVLESIRKNKVCLKGGLITPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLSTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKVAAQKTANPVALLLSSAMMLRHLQFPAFADRLEVAVEKVILEGKYRTKDLGGTSTTQEVVDAVIDALD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03593 371 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 40 369 IPR004434 GO:0006099
Tsu04g03593 371 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 1 368 - -
Tsu04g03593 371 Gene3D Isopropylmalate Dehydrogenase 27 370 - -
Tsu04g03593 371 SMART Iso_dh_2 43 366 IPR024084 -
Tsu04g03593 371 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 368 - -
Tsu04g03593 371 Pfam Isocitrate/isopropylmalate dehydrogenase 44 366 IPR024084 -
Tsu04g03593 371 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03593 Tsu-Chr4 44979236 44984845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03593 K00030 - gmx:100777867 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03593 04 44979236 44984845 Tsu04g03593 04 44979236 44984845 ECH
Tsu05g00923 05 8014296 8018739 Tsu04g03593 04 44979236 44984845 PCT