Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00922 ATGGCAGGTGCTATTATTTCTGCACTCAACACAAAACTAGACGCAACAACATTAGCACTTATATTAGAACAATTAGAGCATTGCAAAATCATATTTGTGGACTATGAACTTATTGACTCTGCCCTCAAAGCAACAGAAATAATCTCCCAGAGAAAATCCAAGCCGCCCCTTATTGTCCTAATACAAGATTATGACCAATTAGTGAAAGATATACCTCAAGGTACCTTGATCTACAATGAACTTCTTGAAAAGGGACAATCAGATTTTAACATTTCAATGCCAAGCAATGAATGTGATCCTATATCAGTGAATTATACTTCAGGCTCAACAGGAATTCCAAAAGGAGCAGTTTATAGTCATAGAAGTGTTTATCTTAATTCACTCGCGACGATTACTCGTTTCGATGTTAATCCTATGCCGGTGTTTCTATGGACAGTTGACATGTTTAGATGCAATGGATGGTGTTTCATTTGGTCAATGCCTGCTCTTGGTGGTACAAACATTTGCCTAAGAAATAATTTTTCAGcaaaagatatttttgatgcAATTCATGTTCATAAGGTAACACATTTGTGTGGTGCACCTACCCTTTTGGAAATTATTGCAAATTGTGACATTATCAAGTCTTTTTCACACAAGGTTTGTGTCACAGTTGCTGGTATATTACCATCattcaaaattattaataagGTGGCAGAACTTGGATTTGATGTGAATATTGGTTATGGCATGACTGAAGCATTAGGTCCAGTTATTGTAAGAAAGTGGaaacaaaattttgatgatgatgttacAAAGCTAAATTATTTTGAACAAAAAGGGGTTATAGAGTTTATGGTGGTAGAAGTTGATGTGAAAGATCCAAATTCCATGAATAGTGTTCCCTATGATGGAAAAACCATAGGTGAAATTATGTTCAAAGGGAATACTTTAATGTTAGGGTATCTCAAGAGTTCACAAGTGAGTGATGAAGCTTTTAAGGATGGTTGGTATAGGACTAAAGACCTAGGTGTTAAGTTACCTAATGGTTCTTTTAATTTGAAGGATAGAGcaaaagatattatttattCTAAGGGTGAGTTTGTGAGTTCATTAGAGGTGGAAGCTGTTTTGTTGAATCATCCAATGGTTTTGAAAGCAGCTGTTGTGGGGAGATATGATGATGGGTCACCTTGTGCAGTTGTGAAATTGAAAGATGGGTGTAGTGCTAATGTTGAAGATATCATCAAGTTTTGTGAAGATCAATTGGATGCTCATATGGTTCCTAAGAGTGTGGTGTTTGGTGATTTGCCTCTTAATTCAACTGGGAAGGTACAAAAGTTTGTTATTAGAGAAAAGATTAAAAGCAACGGGTGGCGTGAGTCAATTAATTAG 1374 0.3464 MAGAIISALNTKLDATTLALILEQLEHCKIIFVDYELIDSALKATEIISQRKSKPPLIVLIQDYDQLVKDIPQGTLIYNELLEKGQSDFNISMPSNECDPISVNYTSGSTGIPKGAVYSHRSVYLNSLATITRFDVNPMPVFLWTVDMFRCNGWCFIWSMPALGGTNICLRNNFSAKDIFDAIHVHKVTHLCGAPTLLEIIANCDIIKSFSHKVCVTVAGILPSFKIINKVAELGFDVNIGYGMTEALGPVIVRKWKQNFDDDVTKLNYFEQKGVIEFMVVEVDVKDPNSMNSVPYDGKTIGEIMFKGNTLMLGYLKSSQVSDEAFKDGWYRTKDLGVKLPNGSFNLKDRAKDIIYSKGEFVSSLEVEAVLLNHPMVLKAAVVGRYDDGSPCAVVKLKDGCSANVEDIIKFCEDQLDAHMVPKSVVFGDLPLNSTGKVQKFVIREKIKSNGWRESIN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00922 457 PANTHER ACYL-ACTIVATING ENZYME 1 449 - -
Tsu05g00922 457 Gene3D - 1 351 IPR042099 -
Tsu05g00922 457 Pfam AMP-binding enzyme 1 356 IPR000873 -
Tsu05g00922 457 PANTHER FATTY ACYL-COA SYNTHETASE FAMILY PROTEIN 1 449 - -
Tsu05g00922 457 Pfam AMP-binding enzyme C-terminal domain 366 437 IPR025110 -
Tsu05g00922 457 SUPERFAMILY Acetyl-CoA synthetase-like 1 448 - -
Tsu05g00922 457 ProSitePatterns Putative AMP-binding domain signature. 103 114 IPR020845 -
Tsu05g00922 457 Gene3D - 352 451 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00922 Tsu-Chr5 8011171 8012888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00922 1 449 Miscellaneous Gene Families AT1G20560 46.638 3.07e-141 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00922 - - lang:109330780 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00922 05 8011171 8012888 Tsu04g03592 04 44975631 44978201 PCT