Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03592 ATGAACAACATCTTCAACAAGATCATGCACTGGACTCGTTCTCTAACCCATTCCAGATCAATCAACAACTACTCACGCaaattttcaaacttttctAAGAACCCTGATGGAGGAACATGGGAATCAATGGAGGGTTTACTTCATTGCTCTGCAAATTCTGTTCCTTTGTCTCCAATCAACTTCCTTGAGAGAGCAGCAAAGGTTTGTAGAGACAGAACATCTGTTGTGTATGGTTCTTTGAACTATAATTGGGGTCAAACTCATCAACGTTGTCTCAAACTTGCTTCTTCTCTTACACAATTGGGGATTTCCCGCGGGGATGTGGTTGCCACCCTAGCACCTAATGTCCCTGCAATGTATGAGCTGCATTTTGCAGTACCAATGGCCGGAGCCATCCTTTGTACCCTTAATTCGCGTTTGGACGCAGCTATGGTTTCAGTACTGCTCGAGCATTCACAAGCAAAAATCCTTTTTGCTGACTACCAACTACTTGAAATTGCTCAAGGAGCATTGGCCTTGCTTCGCGAAAGAGGATCAAAATTGCCGGTTATAGTCTTAGTTACTGATTCTGATTGCTCATCTCTGATTGACATTACACCAATCAATTACGAGTATGAGAAGTTAATGGAAGTTGGACATGATGGTTTCGAAACTGTGAAACCGCAAAGTGAATGGGATCCTATAAGTATAAATTACACCTCAGGCACCACATCTAGGCCTAAAGGAGTTGTCTACAGTCATAGAGGTGCTTATCTAAACTCTTTAGCAACAGTTCTACTCTTTCAAATGGACATCTTTCCTGTTTATCTTTGGAATGTTCCGATGTTCCATTGTAACGGTTGGTGTCTCCCTTGGGGAGTAGCAGCGCAATTTGGcacaaatatttgtttaagaAAAGTATCTCCAAAGAACATATTTGACGATATAATTCAACATAAGGTGACACACATGGCAGGAGCTCCTACTGTGCTTAACATGATTTTGAATTCTGCATCGACTCATAGAAAGCCACTCAACCACAAGGTTTTAGTTATGACAGGTGGTTCTCCTCCACCCCCGCAGATCCTTTCCAAGATGGAAGAAATTGGTTTTAGTGTTTCTCATCTCTACGGCTTGACAGAAACGTACGGTCCGGGGAGTTTTTGTGCGTGGAGACCTGAGTGGGATATGTTGCCTCCTGAAGAAAGATCAAAGATGAAAGCTAGGCAAGGTGTGCCTCATGTAGGGTTGGAGGAAATCGATGTCAAAGATTCTGAAACTATGGAAAGTGTTCCAGCGGATGGAAAAACGGTTGGTGAGATAATGTTTAGAGGCAATACAGTGATGAGTGGTTATTTTAGAGATTTGAAAGCAACAGAAGAATCTTTCAAAGATGGTTGGTTTCATAGTGGGGATTTAGCAGTGAAACATTCTGATGGGTACATAGAAGTTAAGGATAGGTTGAAGGACATAATTATCTCTGGAGGAGAAAACATTAGCTCGGTCGAGGTAGAAACTGTTTTGTATAGCCATCCGGCTGTTCTTGAGGCTGCGGTTGTTGCTCGACCGGATGATCATTGGGGTCAAACTCCTTGCGCTTTTCTGAAATTGAAAGACGGGTTTGATGAAGATGCTCAAGAAATAATTGCATTTTGTAGGGAACATTTGCCGCATTATATGGCTCCTAAAACAATCATTTTTCTAGATATTCCAAAGACTTCTACAGGGAAGATACAAAAGTATATTCTAAGGGAGAAAGCAAAGGCTTTGGGAAGTATATCTATATCCAGCCCCTTGAATTGTGAAAAAGTTGTTGATTGTTCAAGTAAGTTTAGGAATAATGAATAA 1827 0.4083 MNNIFNKIMHWTRSLTHSRSINNYSRKFSNFSKNPDGGTWESMEGLLHCSANSVPLSPINFLERAAKVCRDRTSVVYGSLNYNWGQTHQRCLKLASSLTQLGISRGDVVATLAPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSVLLEHSQAKILFADYQLLEIAQGALALLRERGSKLPVIVLVTDSDCSSLIDITPINYEYEKLMEVGHDGFETVKPQSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVLLFQMDIFPVYLWNVPMFHCNGWCLPWGVAAQFGTNICLRKVSPKNIFDDIIQHKVTHMAGAPTVLNMILNSASTHRKPLNHKVLVMTGGSPPPPQILSKMEEIGFSVSHLYGLTETYGPGSFCAWRPEWDMLPPEERSKMKARQGVPHVGLEEIDVKDSETMESVPADGKTVGEIMFRGNTVMSGYFRDLKATEESFKDGWFHSGDLAVKHSDGYIEVKDRLKDIIISGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFLKLKDGFDEDAQEIIAFCREHLPHYMAPKTIIFLDIPKTSTGKIQKYILREKAKALGSISISSPLNCEKVVDCSSKFRNNE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03592 608 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Tsu04g03592 608 Gene3D - 482 584 IPR045851 -
Tsu04g03592 608 Pfam AMP-binding enzyme 63 487 IPR000873 -
Tsu04g03592 608 SUPERFAMILY Acetyl-CoA synthetase-like 47 581 - -
Tsu04g03592 608 CDD ttLC_FACS_AEE21_like 54 578 - -
Tsu04g03592 608 Gene3D - 46 481 IPR042099 -
Tsu04g03592 608 Pfam AMP-binding enzyme C-terminal domain 496 570 IPR025110 -
Tsu04g03592 608 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 23 586 - -
Tsu04g03592 608 PANTHER ACYL-ACTIVATING ENZYME 23 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03592 Tsu-Chr4 44975631 44978201 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03592 119 587 Miscellaneous Gene Families AT1G20560 63.270 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03592 - - gmx:100500429 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03592 04 44975631 44978201 Tsu04g03592 04 44975631 44978201 ECH
Tsu05g00922 05 8011171 8012888 Tsu04g03592 04 44975631 44978201 PCT