Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00858 ATGGTGCTCGAGgCAACAATGATCTGTATCGACAATTCCGAATGGATGCGTAACGGAGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGACGCTGTTAATCTCATTTGCGGTGCTAAGACTCAGTCTAATCCGGAAAATACAGTGGGAGTTCTTATAATGGCAGGGAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGATCTAGGCAAGATCTTAGCTTGCATGCATGGACTAGAAGTAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAATTAGCTCTAAAGCATCGTCAAAATAAAAAGCAACAGCAAAGGATTATTGTCTTTGCTGGAAGTCCCGTCAAGCATGAAAAGAAAATGCTGGAGATGATAGGGAGAAAGTTGAAAAAGAATAGCGTAGCACTTGATATTGTTAATTTTGGTGAAGAAGACCAGGAGAAGACAGAGAAACTGGAATCACTCCTTGCAGCTGTAAACAATAATGATACAAGCCATATTGTCCATGTTCCAGCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCAATTTTTACTGGTGACGGGGAAGGTGGAAGTGGCTTTGCTGCTGCTGCAGCAGCAGCTGCAGCTGGAGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACCTGGATCCTGAACTGGCTCTTGCCTTAAGAGTTTCGATGGAAGAGGAAAGAGCCAGGCAGGAAGCAGCAGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAAGGAGGTGAACAGCAAGCCGGTTCACAAGAAGCCAGCTCACAAGATGCGACAATGACCGAGCGTGCCAGTGCATCAACTTCTGAAGCAGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAGGCGCTTGCAATGTCAATGGATGAACCTGCTGTTGTCCACGATGTAAAAGATACAGATATGTCAGAAGCATCTGTTGATGACCCTGAGCTGGCACTAGCTCTCCAATTGTCGGTAGCGGATAGTACAAAGGATCAAGCAAGCCAGTCAGAGGTGTTAGCAGATCAATCCGCTGTATCTGATATTCTCGCGTCGCTTCCTGGAGTTGACCTAAATGACCCTTCCATCAAAGATTTGCTGGCATCCATGCAAAATAAGTCTGAGCCGCAGCAGAAGAATGACGACAAGTCATCAAACGAGGATAAGAAATAA 1215 0.4551 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEVGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDQEKTEKLESLLAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQGGEQQAGSQEASSQDATMTERASASTSEAENKTTDLMDDENALLQQALAMSMDEPAVVHDVKDTDMSEASVDDPELALALQLSVADSTKDQASQSEVLADQSAVSDILASLPGVDLNDPSIKDLLASMQNKSEPQQKNDDKSSNEDKK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00858 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 403 - -
Tsu05g00858 404 Gene3D - 220 309 - -
Tsu05g00858 404 MobiDBLite consensus disorder prediction 369 404 - -
Tsu05g00858 404 SUPERFAMILY vWA-like 4 175 IPR036465 -
Tsu05g00858 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 403 - -
Tsu05g00858 404 MobiDBLite consensus disorder prediction 390 404 - -
Tsu05g00858 404 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Tsu05g00858 404 MobiDBLite consensus disorder prediction 257 287 - -
Tsu05g00858 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Tsu05g00858 404 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Tsu05g00858 404 Coils Coil 232 252 - -
Tsu05g00858 404 MobiDBLite consensus disorder prediction 242 292 - -
Tsu05g00858 404 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Tsu05g00858 404 Pfam Ubiquitin interaction motif 328 342 IPR003903 -
Tsu05g00858 404 Pfam Ubiquitin interaction motif 295 310 IPR003903 -
Tsu05g00858 404 SMART VWA_4 2 175 IPR002035 -
Tsu05g00858 404 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Tsu05g00858 404 CDD VWA_26S_proteasome_subunit 1 188 - -
Tsu05g00858 404 SMART uim 222 241 IPR003903 -
Tsu05g00858 404 SMART uim 295 314 IPR003903 -
Tsu05g00858 404 SMART uim 327 346 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00858 Tsu-Chr5 7431277 7436838 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00858 K03029 - gmx:100814594 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00858 05 7431277 7436838 Tsu05g00858 05 7431277 7436838 ECH
Tsu05g00858 05 7431277 7436838 Tsu04g03532 04 44500399 44509228 PCT