Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03532 ATGTCACCAtctgaatcagaatcagaagaAGATGTGAAATTAGCTGAGCCATCTAAAACGGCAGTAAATAATAGAGATGCTCTATTAGATAAACTCGGAGACATAAGCTGGCCAGAGAATGTGGAATGGATACACAAACTCTCCGTTGATATTGATCAAGAGCAGGAAGTAGATGTTAACGATGACTTGGCACGAGAGCTTTCATTTTACACTCAGGCGTTGGAGGGAACTAAACAGGCCTTTGAGAAACTTCATTCTGTGGGTCGCCCGTTTCTTAGACCTGCTGACTACTATGCAGAAATGGTGAAGACAGATAGCCACATGGAAAAGGTGAAAAGTCGGCTATTAGAAGAGAAGCGGAAGATGGAAGAGGCTGAAGAGAGAAGAAAGGCCAGGGAGGCAAAGAGATTATCTAAAGAGATTCAGTCACAGAAATTAAAAGAAAGGGCTAAGCAGAAAAAGGAGGACATTGAATCTGTTAAGAAATGGAGGAAGCAGAGACAACAGAGTGGGTTTGCTGACAATGACGGAGATAAGACTTTTGACTTTGAGGACGGAAAAGGGTTTGAGAGGTCAAAGAAGAAAAGGCCTGGAGTATCTCCGGGTGACCGATCTGGAGGTAAGGCAAAGCAATCCTTTGGAAAGGGAAAGGCAAAGAAAGGAGAAGTCAAGAATTCTAAATTTGGTTTTGGAGGCAAGAAGGGATTGAAGAAACAGAATACGGCTGACACTACTAATGATTTTCGTGGATTCGGTAAAAAGGGTGCCGTTGCAGGAAACAAGAGAAAGAGAAAAAAATTTCTCACCTTATTCCAAATCTCGCTTCACAACTTCTTCAACTTTCCAACAATGGTGCTCGAGGCGACTATGATCTGTATCGATAATTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAATCAGACGCTGTAAGTCTGATTTGCGGTGCTAAAACTCAGTCTAATCCGGAAAATACTGTTGGAGTTCTCACAATGGCGGGGAAGGGTGTTCGGGTTTTGGCTACCCCTACTAGTGATTTGGGCAAAATCTTAGCTTGTATGCATgGTCTAGAAATAGGCGGTGAGATGAACCTTGCGGCTGGCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAGCATCAAAGGATTATTGTCTTTTCTGGAAGTCCTGTCAAGCATGAAAAGAAAATGTTGGAGATGATTGGGAAAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTCGGTGAAGATGACGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCAGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTTTCAGATGTACTTATAAGTACACCTATATTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCTGCAGCAGCATCTGCAGGTGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCCAGGCAGGAAGCAGCTGCGAAAAAGGCTGCTGATGATGCTTCCAAACAGGAGAAAGGTGGCGAGCAGCAAGCTATTTCCCAGGATGCAACTATGACTGAGCGAACCAGCACAGAAGCTGAGACAAATGATATGATGGACGATGAGAATGCTCTACTACAACAGGCCCTTGCAATGTCTATGGATGATGCTGTAGTTAACCATGATGTAAGAGATGCAGATATGTCTGAAGCTGCTACAGATGACGTTGACTTGGCTCgagCTCTCCAATTGTCACAAACCCCTGCAAGCCTTGCCGCCGATCCAGTGGGGAGACTGTTGGCAGATCAGTCCTTTGTATCTTCTGTCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAGGATTTACTGGCTTCCATGCAAAATCAGTCTGAGTCTCACAAGAAGAATGAAGAGGAGCGACCAAATGAGGAGTCAGATTAA 2040 0.4397 MSPSESESEEDVKLAEPSKTAVNNRDALLDKLGDISWPENVEWIHKLSVDIDQEQEVDVNDDLARELSFYTQALEGTKQAFEKLHSVGRPFLRPADYYAEMVKTDSHMEKVKSRLLEEKRKMEEAEERRKAREAKRLSKEIQSQKLKERAKQKKEDIESVKKWRKQRQQSGFADNDGDKTFDFEDGKGFERSKKKRPGVSPGDRSGGKAKQSFGKGKAKKGEVKNSKFGFGGKKGLKKQNTADTTNDFRGFGKKGAVAGNKRKRKKFLTLFQISLHNFFNFPTMVLEATMICIDNSEWMRNGDYSPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQHQRIIVFSGSPVKHEKKMLEMIGKKLKKNSVALDIVNFGEDDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAADDASKQEKGGEQQAISQDATMTERTSTEAETNDMMDDENALLQQALAMSMDDAVVNHDVRDADMSEAATDDVDLARALQLSQTPASLAADPVGRLLADQSFVSSVLASLPGVDPNDPSVKDLLASMQNQSESHKKNEEERPNEESD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03532 679 Coils Coil 108 142 - -
Tsu04g03532 679 Pfam Ubiquitin interaction motif 602 615 IPR003903 -
Tsu04g03532 679 Pfam Ubiquitin interaction motif 570 585 IPR003903 -
Tsu04g03532 679 Pfam Ubiquitin interaction motif 507 520 IPR003903 -
Tsu04g03532 679 Pfam Eukaryotic rRNA processing protein EBP2 22 265 IPR008610 -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 640 679 - -
Tsu04g03532 679 ProSiteProfiles VWFA domain profile. 288 472 IPR002035 -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g03532 679 Gene3D von Willebrand factor, type A domain 286 469 IPR036465 -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 525 568 - -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 542 561 - -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 525 541 - -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 120 255 - -
Tsu04g03532 679 Gene3D - 503 587 - -
Tsu04g03532 679 Pfam von Willebrand factor type A domain 289 398 IPR002035 -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 120 201 - -
Tsu04g03532 679 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 284 677 - -
Tsu04g03532 679 SMART VWA_4 285 458 IPR002035 -
Tsu04g03532 679 SMART uim 570 589 IPR003903 -
Tsu04g03532 679 SMART uim 602 621 IPR003903 -
Tsu04g03532 679 SMART uim 505 524 IPR003903 -
Tsu04g03532 679 CDD VWA_26S_proteasome_subunit 284 471 - -
Tsu04g03532 679 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 284 677 - -
Tsu04g03532 679 Coils Coil 515 535 - -
Tsu04g03532 679 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 505 524 IPR003903 -
Tsu04g03532 679 MobiDBLite consensus disorder prediction 664 679 - -
Tsu04g03532 679 SUPERFAMILY vWA-like 287 457 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03532 Tsu-Chr4 44500399 44509228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03532 K03029 - gmx:100814594 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03532 04 44500399 44509228 Tsu04g03532 04 44500399 44509228 ECH
Tsu05g00858 05 7431277 7436838 Tsu04g03532 04 44500399 44509228 PCT