Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00852 ATGAGTCTATTCTTACATAACCAACATTTTCCTCAATCCTTCTTATGTTTCTTAATCTTCCTCATTTTCAAAGTGATTTCAGTTTCAGGAGCAACATTTACATTTACAAACAAGTGTGATTATACGGTATGGCCAGGAATTTACGGAAAACCGGAACTTGGAACGACTGGTTTCGAGCTAACAAAAGCAACTACTAGAACGTTCCAAGCACCAACTGGTTGGTCCGGTAGATTCTGGGGACGAACCGGTTGTCAATTCGATTCCACCGGTCATGGAACATGTTCAACCGCCGATTGCGGCTCCGGAGAAATCTCCTGCAACGGCGCAACAGCTTCACCGCCGGCAACACTCGCCGAATTCACACTAGGAACCGGTTCAATGGACTTCTACGACGTTAGCTTGGTCGATGGTTACAATCTTCCAATGATGGTGACTACCAGCGGAGGTACCGGTTCCTGTGAGGTTACTGGTTGTAGCTCCGATCTTAATCTTAAATGTCCGTCGGAATTGAAGGTTGAAGGTGGCGGCGCGTGTAATAGTGCTTGTGGCGCGTTTGGTAAACCGGAATATTGTTGTAATGGCGCGTTTAGTAATCCTGACACCTGTCATCCTTCTGTGTATTCTCAAATGTTTAAAGCTGCTTGTCCTAAAGCTTATAGTTATGCTTATGATGATGCAAGTAGCACTTTTACTTGTTCTGGTGCTGATTATTCAATCACATTTTGTCCCACTTCTTCATCTAgtcTGAAGTCTGCAGCGGATTCATCTACTAATAATACGAAGGGAATGGGTTCGGGTTCGAGAGGTGGCTCTGGGCAATCGGAGCTGGCTAACGATTCGTGGATGGCTTATATGGCTACGGCTTCTGGGGCTTCTACTACAACTTTTCctttgttgttggtggtggttgGTTTCATTTTTAGTATCTTTGGTTGTTTTATGTTACCTTCATAG 954 0.4329 MSLFLHNQHFPQSFLCFLIFLIFKVISVSGATFTFTNKCDYTVWPGIYGKPELGTTGFELTKATTRTFQAPTGWSGRFWGRTGCQFDSTGHGTCSTADCGSGEISCNGATASPPATLAEFTLGTGSMDFYDVSLVDGYNLPMMVTTSGGTGSCEVTGCSSDLNLKCPSELKVEGGGACNSACGAFGKPEYCCNGAFSNPDTCHPSVYSQMFKAACPKAYSYAYDDASSTFTCSGADYSITFCPTSSSSLKSAADSSTNNTKGMGSGSRGGSGQSELANDSWMAYMATASGASTTTFPLLLVVVGFIFSIFGCFMLPS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00852 317 ProSiteProfiles Thaumatin family profile. 30 245 IPR001938 -
Tsu05g00852 317 Pfam Thaumatin family 37 243 IPR001938 -
Tsu05g00852 317 CDD TLP-PA 32 242 - -
Tsu05g00852 317 PANTHER OS03G0233200 PROTEIN 10 267 IPR001938 -
Tsu05g00852 317 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Tsu05g00852 317 Gene3D Thaumatin 31 243 IPR037176 -
Tsu05g00852 317 SUPERFAMILY Osmotin, thaumatin-like protein 31 243 IPR037176 -
Tsu05g00852 317 MobiDBLite consensus disorder prediction 249 274 - -
Tsu05g00852 317 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 10 267 - -
Tsu05g00852 317 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Tsu05g00852 317 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Tsu05g00852 317 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Tsu05g00852 317 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Tsu05g00852 317 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Tsu05g00852 317 SMART tha2 33 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00852 Tsu-Chr5 7405466 7407240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00852 15 265 Receptor kinase-like Gene Family AT5G38280 47.348 4.26e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00852 - - gmx:100815652 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00852 05 7405466 7407240 Tsu05g00852 05 7405466 7407240 ECH
Tsu05g00852 05 7405466 7407240 Tsu04g03522 04 44376196 44378512 ECH