Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03522 ATGTCTCTGTTCTCACATCACCAACATTCTTCAAATCAATTCTTCATTTTCCTACTTATCATAGCTTTCAAAGGGTTTACAATTTCAGCAACAACATTCACATTTGTGAACAAATGTGATCATACAGTATGGCCAGGAATTCTAGGAAAACCGGATCTCGGAACGACCGGTTTCGAACTCAAAAAAGGAACAACACAAACATTCCAAGCACCAACCGGTTGGTCTGGTAGAGTATGGGCAAGAACCGGTTGCAAATTCGACGATTCCGGTCATGGAACATGCTCAACCGGAGACTGCGGTTCGGGAGAAATCAACTGTAACGGTAATGGTGCAACACCACCAGCAACACTAGCAGAATTCACTCTAGGAACAGGCTCACCTGATTACTACGACGTTAGTCTCGTCGATGGTTACAATCTTCCGGTGATGGTGGAAACCAACGGCGGTTCGGGCTCTTGCGAAGCCACCGGCTGTGGTGAGGATATTAATCGGAGGTGTCCGTCGGAGTTGAGAGTGGATGGTGGTGACGCGTGTAATAGCGCGTGTGGCGCGTTTGGGAAAGAAGAGTACTGTTGTAGCGGCGCGTTTAATTCTCCGGCGAGTTGCTCGCCGTCGGTTTATTCGGAAATGTTTAAAGCTGCTTGTCCAAAATCTTATAGCTATGCATTTGATGATGCTACGAGTACTTTTACTTGTACTGATGCTGCTGATTATACTATCACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAGTCTTTGATGCAGTCAGGACCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAGTCATGGATAGCTAATTTGGCTACAGGAGACTCTACAAGAATAAGCCAACCATTTTCAATTTCCAtGAAAAGGATCAGACAAAATGTAATTGGTGTAATTAACATAGATTATGATTGTTGA 930 0.4409 MSLFSHHQHSSNQFFIFLLIIAFKGFTISATTFTFVNKCDHTVWPGILGKPDLGTTGFELKKGTTQTFQAPTGWSGRVWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGTGSPDYYDVSLVDGYNLPVMVETNGGSGSCEATGCGEDINRRCPSELRVDGGDACNSACGAFGKEEYCCSGAFNSPASCSPSVYSEMFKAACPKSYSYAFDDATSTFTCTDAADYTITFCPSSSPSLKSLMQSGPGSSVEQAAVATKSWIANLATGDSTRISQPFSISMKRIRQNVIGVINIDYDC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Tsu04g03522 309 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Tsu04g03522 309 SUPERFAMILY Osmotin, thaumatin-like protein 31 245 IPR037176 -
Tsu04g03522 309 CDD TLP-PA 32 243 - -
Tsu04g03522 309 Pfam Thaumatin family 37 244 IPR001938 -
Tsu04g03522 309 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Tsu04g03522 309 PANTHER OS03G0233200 PROTEIN 7 268 IPR001938 -
Tsu04g03522 309 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 7 268 - -
Tsu04g03522 309 SMART tha2 33 244 IPR001938 -
Tsu04g03522 309 ProSiteProfiles Thaumatin family profile. 30 244 IPR001938 -
Tsu04g03522 309 Gene3D Thaumatin 31 244 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03522 Tsu-Chr4 44376196 44378512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03522 15 285 Receptor kinase-like Gene Family AT5G38280 43.463 3.50e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03522 - - gmx:100808342 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03522 04 44376196 44378512 Tsu04g03522 04 44376196 44378512 ECH
Tsu05g00852 05 7405466 7407240 Tsu04g03522 04 44376196 44378512 ECH