Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00773 ATGTTTTCTTCACCAAGAGAAATGCCTTCACCATCATCAATTTTCTCTGCATATGCATCCATGACAGCTTCAATCATGCTACTTCGTTCCATGGCACAAGAACTCATTCCTCAACCAATTCGTGGCTACCTTTTAAACACTTTCCGCTACTTCATAAAAACACGTTCCTCAACACTCACACTCATCATAGAAGAATCAACAGGCATAGCAAGAAACCAAGTTTATGATGCTGCAGAATCTTATCTCTCAACAAGAGTTACTCCAGAAAACGAAAGACTCAAAATCAGCAAAGTCCCAAAAGAGAAGAAACTCACTATTCGATTAGAAAAAGGCGAAAAATTAACCGATGTTTACGAAGGTGTTTGTCTTGAATGGAGATTCATTTGTGCTGAAACAGAGAAAAACAGTGCAAATGATATGCATAACAGTAACAACGGTATCTCAGTTAGAtcagaaaagaaatattttgaacttAGTTTTCACAAAAAGTTTAAGGAAATTGTTTTAGAATCTTATCTTCCTTTCATTCTTGATAAAGCTAaagaaatgaaagaagaagaaagagtgtTGAAAATGCATACTTTAAACACTGCTTATTGTTATAGTAGTGTGAAATGGGATTCTATAAATCTTGAACATCCTTCAACATTTGAAACACTTGCAATGGAACCAGAATTGAAGAATGAAATTATACAAGATTTGAATATGTTTGTGAAAAGAAGAGAGTTTTATAAGAAAGTTGGAAGGGCTTGGAAACGTGGTTATTTGCTATATGGTCCTCCTGGAACTGGAAAATCGAGTTTGATTGCGGCTATGGCGAATTATTTGAAGTTTGATATATTTGATCTTCAACTTGGGAATATTGTTAGAGATTCTGATCTTAGAAAGTTGCTTCTTGCTACTGCTAATAGGTCAATTTTGGTTATTGAAGATATTGATTGCAGTGTTGATATTCCTGAACGTGGTGGTAGGCATGGAGATGGACGTAAACAGACTGATATACAGTTGACATTATCTGGACTACTAAACTTCATAGATGGATTATGGTCAAGTTGTGGAGATGAGAGAATCATCATATTTACAACAAACCACAAAGAAAGATTAGATCCAGCTCTTTTAAGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGTTCTTATGAAGGTTTCAAAATTTTGGCCTCAAATTACTTGGAAATTCCCCATGATAACCCCTTCTTTGGTGAGATTGAAGGACTAATTGAAGACATACAAATAACACCGGCGCAAGTGGCGGAGGAATTGATGAAAAGCGAAGACGCCGAGGCGACACTTGAAGGATTTGTGAAGTTACTTAAAAGGAAGAAAATGGAAGGTGATGTGTGTGAgaacaataataaaatagaacaaGAGAAGCAATCTAAAAAACGTAAGGTTAGTTGCAAGCAAAAAAGAGGAGGTGGGAATAGCAAAAGCAATGTTGGTGTTACTTTAAGAAGGACAAGAGGAATTAAAAGAGGTTCtagtttgtaa 1518 0.3458 MFSSPREMPSPSSIFSAYASMTASIMLLRSMAQELIPQPIRGYLLNTFRYFIKTRSSTLTLIIEESTGIARNQVYDAAESYLSTRVTPENERLKISKVPKEKKLTIRLEKGEKLTDVYEGVCLEWRFICAETEKNSANDMHNSNNGISVRSEKKYFELSFHKKFKEIVLESYLPFILDKAKEMKEEERVLKMHTLNTAYCYSSVKWDSINLEHPSTFETLAMEPELKNEIIQDLNMFVKRREFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDIPERGGRHGDGRKQTDIQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYEGFKILASNYLEIPHDNPFFGEIEGLIEDIQITPAQVAEELMKSEDAEATLEGFVKLLKRKKMEGDVCENNNKIEQEKQSKKRKVSCKQKRGGGNSKSNVGVTLRRTRGIKRGSSL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00773 505 CDD AAA 252 386 - -
Tsu05g00773 505 Pfam Domain associated at C-terminal with AAA 36 128 IPR025753 -
Tsu05g00773 505 MobiDBLite consensus disorder prediction 460 505 - -
Tsu05g00773 505 ProSitePatterns AAA-protein family signature. 356 374 IPR003960 GO:0005524|GO:0016887
Tsu05g00773 505 Pfam ATPase family associated with various cellular activities (AAA) 256 385 IPR003959 GO:0005524|GO:0016887
Tsu05g00773 505 PANTHER BCS1 AAA-TYPE ATPASE 7 467 - -
Tsu05g00773 505 Gene3D - 383 454 - -
Tsu05g00773 505 Gene3D - 204 382 IPR027417 -
Tsu05g00773 505 Coils Coil 460 480 - -
Tsu05g00773 505 PANTHER BNAA10G17020D PROTEIN 7 467 - -
Tsu05g00773 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 435 IPR027417 -
Tsu05g00773 505 SMART AAA_5 251 388 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00773 Tsu-Chr5 6516392 6520585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00773 244 440 Miscellaneous Gene Families AT3G02450 33.173 5.63e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00773 - - gmx:100789621 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00773 05 6516392 6520585 Tsu04g03446 04 43664594 43673798 ECH
Tsu05g00773 05 6516392 6520585 Tsu05g00773 05 6516392 6520585 ECH