Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03446 ATGTCTTCCTATTTTTCTTCCTTCTCTTCCACATCATCGGAAACAAACCTAACCACCGCAAAGACAATTCTCTCAACCGCCGCCACAGTAGCCGCCACCGCGGTACTAGTCCGTTCCATCGCCAATGAATTTCTCCCAATGGACCTCCGCGACTACGTATTCACCGGAATCCGTTCCATTTTCTCTCGTTTCTCCACCGACCTAACAATTGTAATCGAAGAATTGGAAGGTCTCGACAATAACCAAATCTACTCCGCCGCTGAAACCTATCTTGGCACCATAGTTTCACCTTCAACAAAACGATTCCGTATAAGCAAATCCAATCACCAACAAACTTTCACTCTTACAATGGAACGTAACCAATCAGTAACCGATTTCTTCAACGGCGTTAAAGTTAACTGGATCCTCTTCTGCCACCACGTCGAGAATTTCCACAATAACGGCAATCAAACTGCCACGGTAAAATCAGAAATCCGTTCGTTGGAATTAACGTTCAacagaaaacacaaaaatatgaTTCTCAATGATTACATCCCATTTATTCTCCGAGAATCAacatcaaagaaacaagaattaaAAGCTCGACGAATATTCACCGTTGATTATCAGAATCTGTACGGGAATCTTAACGACGCGTGGATGGGGACGACGCTAAATCATCCTTCAACTTTTGACACGCTGGCACTTGACCGTGATTTACGGGAGTTTATTATAGATGATTTGGAAAGGTTTGTTATGAGGAAGGAATATTATAGGGAAGTTGGAAAAGCTTGGAAGAGAGGTTACTTGTTGTATGGTCCACCTGGAACTGGAAAAAGTAGTTTGATTGCTGCTATGGCGAATTAtttgcattttgatatttatGATTTGGAATTGACTGAGTTGAATTGTAATGATGAATTGAGGAAATTGTTGATTGCTATGCCTAACAGGtctattgttgttgttgaggaTGTTGATTGTACTGTTGAGTTTCAGGATCGTGTTGTGCAATCTAAGTCTGGCAGAAATGATAAACAgGTTACACTATCAGGGTTGCTGAATTTTATTGATGGACTATGGTCAAGTTGTGGAGATGAAAGGATTATAGTGTTCACAACAAACCACAAGGAAAAGCTTGATCCAGCTTTGTTGCGCCCCGGCCGCATGGATGTTCATATACACATGTCCTATTGTACTCCCTATGGTTTTAGACAACTAGCTTTCCGTTACCTTGGAATTAAAGAACATGCCCTATTTGGAGAGATTGAGGAAACGATTCAGCAAACGCTGGTAACTCCAGCTGAAGTGGCAGAGCAGCTTCTCAAGGGCAGCGAGACGGAAACTACTCTTAAAGATGTATCAAATTTTCttagaaagaagaaagaaattcaGGAACTCGAGGCTAAAAAGAGAGAACAAGAGCAGCGGCAGCTGGTAGATGGCCGTGTTAATGAAGAAAATGTGACAACGGATATGACAAAGATGACCCCTACCAGTACTTGTTGGCGAGTCTGGGGAAGTTCGGGAGAGACAACAGGATCCACTTTCGCTCCCCCACCAAGTCGAACCACGACTGTGATACTGGTTGTTAGGGAGTCTGGGAAAGCTCGGGAGAAACAACAGATCTCAACGATAAAGATGAATCCAGATGCTGTAAAATCTACTCTCACCAATCTAGCATTTGGAAACGTAATTGCAGCAGCTGCTCGTAATTATCAAAAGGAATTGCTTAGTGAAGAGAAGGCAGCACAATCAAGTTCTATAAATGAGGAGGTTGACcttgatgatttgatggatGATCCTGAATTGGAAAAATTGCATGCAGACAGGATTGCAGCTCTTAAGAAAGAAGCAGAGAAACGGGAGGCATGGAAGAAGAAAGGTCATGGGGAATATAGGGAGGTAACTGAAGGGGATTTCTTGGGTGAAGTCACTGGAAGTGAAAAAGTGATATGTCATTTTTATCATAAGGAGTTCTACCGATGCAAGTATGCCTTTTTACTATTGGTCATTGAATCTAACGTCTTATTCCATCTCTTGATACCTGAAGTAACAATTTCATGTGCACCTTTTGTTGCATCAACAAATGATTTCAGGATAATGGATAAGCACTTAAAGTCCCTTTCAACTAAGCATATTGATACGAAGTTCATCAGGCTTGATGCAGAGAATGCGCCGTTCTTTGTTACAAAATTGGCAATCAAGACTTTGCCTTGTGTCATACTGTTCAGACAAGGAGTTGCAGTAGATAGATTGGTAGGGTTTCAAGATCTGGGAGCCAAAGATGATTTTACCACAAGAGCCCTGGAGGTTCTGCTGATAAAGAAAGGTATTATTGCCGAGAAAAAAGACGTGGATGAGGAAGATCAAGAATACGATGAAAGTAAACGTAGAAGCGTTAGATCCTCAGCGGCTGCTGATTCTGATTCTGAATAA 2418 0.402 MSSYFSSFSSTSSETNLTTAKTILSTAATVAATAVLVRSIANEFLPMDLRDYVFTGIRSIFSRFSTDLTIVIEELEGLDNNQIYSAAETYLGTIVSPSTKRFRISKSNHQQTFTLTMERNQSVTDFFNGVKVNWILFCHHVENFHNNGNQTATVKSEIRSLELTFNRKHKNMILNDYIPFILRESTSKKQELKARRIFTVDYQNLYGNLNDAWMGTTLNHPSTFDTLALDRDLREFIIDDLERFVMRKEYYREVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTELNCNDELRKLLIAMPNRSIVVVEDVDCTVEFQDRVVQSKSGRNDKQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHIHMSYCTPYGFRQLAFRYLGIKEHALFGEIEETIQQTLVTPAEVAEQLLKGSETETTLKDVSNFLRKKKEIQELEAKKREQEQRQLVDGRVNEENVTTDMTKMTPTSTCWRVWGSSGETTGSTFAPPPSRTTTVILVVRESGKAREKQQISTIKMNPDAVKSTLTNLAFGNVIAAAARNYQKELLSEEKAAQSSSINEEVDLDDLMDDPELEKLHADRIAALKKEAEKREAWKKKGHGEYREVTEGDFLGEVTGSEKVICHFYHKEFYRCKYAFLLLVIESNVLFHLLIPEVTISCAPFVASTNDFRIMDKHLKSLSTKHIDTKFIRLDAENAPFFVTKLAIKTLPCVILFRQGVAVDRLVGFQDLGAKDDFTTRALEVLLIKKGIIAEKKDVDEEDQEYDESKRRSVRSSAAADSDSE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03446 805 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 14 466 - -
Tsu04g03446 805 SUPERFAMILY Thioredoxin-like 693 774 IPR036249 -
Tsu04g03446 805 SMART AAA_5 258 393 IPR003593 -
Tsu04g03446 805 Pfam ATPase family associated with various cellular activities (AAA) 263 390 IPR003959 GO:0005524|GO:0016887
Tsu04g03446 805 Coils Coil 450 470 - -
Tsu04g03446 805 Coils Coil 772 792 - -
Tsu04g03446 805 PANTHER BCS1 AAA-TYPE ATPASE 14 466 - -
Tsu04g03446 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 434 IPR027417 -
Tsu04g03446 805 Pfam Domain associated at C-terminal with AAA 45 137 IPR025753 -
Tsu04g03446 805 Gene3D - 213 387 IPR027417 -
Tsu04g03446 805 Gene3D - 388 457 - -
Tsu04g03446 805 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Tsu04g03446 805 SUPERFAMILY Thioredoxin-like 583 658 IPR036249 -
Tsu04g03446 805 Gene3D Glutaredoxin 616 785 - -
Tsu04g03446 805 MobiDBLite consensus disorder prediction 783 798 - -
Tsu04g03446 805 CDD AAA 259 391 - -
Tsu04g03446 805 CDD Phd_like_TxnDC9 621 767 - -
Tsu04g03446 805 MobiDBLite consensus disorder prediction 783 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03446 Tsu-Chr4 43664594 43673798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03446 173 384 Miscellaneous Gene Families AT3G47060 28.821 1.59e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03446 - K08900 gmx:100788420 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00773 05 6516392 6520585 Tsu04g03446 04 43664594 43673798 ECH
Tsu04g03446 04 43664594 43673798 Tsu04g03446 04 43664594 43673798 ECH