Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00748 ATGAAACGAACTCGATCTCAAACCAAATCCAATTCCATTTCCAACAACAATCCACAGCCCCAAATCAAAACCCTAATCTCTTCAAAAATCCCTTTCCCCGCCAAAAAAATCCCAAAACTCACcaccaaaaccaaaaaaccaATTCTTCCACCTTCATCGCCACCgctaccaccaccaccaatcGCAAAACCATTATCATCAATCGGCGAAATCGAAACCGCCCTCAACCACCTCCGCGCCGCCGATCCACTACTCTCAACAATCATCAACACCTTCCCTTCTCCCCAATTCACAAACAAAATCACacctttcttttctctcatcaaaaccctaatttcccAACAACTCTCAAACAAAGCTTCATCGTCAATCGAAAACCGTTTCATTTCTCTCTTTGATTCCCAATCTTCAATTCTCCCAAACGCGGTTCTATCCCTTACCCCAACTCAGCTTCGTGAAGTAGGAATCTCGGGACCGAAAGCAACCTACATTCATGATCTTTCGAGGAAATACGTTAATGGGTTTTTGTCGGATTCATCGATTATTGAAATGGATGATGAAATGTTGTATGAGAAATTAATGTCAGTTAAAGGAATTGGACCTTGGTCTGTTCATATGTTTATGATTTTTACACTTCATCGTCCTGATGTTTTGCCTGTTGGTGATCTTGTTGTGAGGAGAGGTGTGGAGAAATTGTATGGTCTTAAGGGTTTGCCTTCACCTTCTCAAATGGAGGTTTTGTGTGAGAAATGGAAGCCTTATAGATCTGTTGGGTCCTCGTATATGTATAGGTCTTTGCTAGAATCACGGTGGTTCACCTGCCAATTTGACTGTTGA 837 0.3835 MKRTRSQTKSNSISNNNPQPQIKTLISSKIPFPAKKIPKLTTKTKKPILPPSSPPLPPPPIAKPLSSIGEIETALNHLRAADPLLSTIINTFPSPQFTNKITPFFSLIKTLISQQLSNKASSSIENRFISLFDSQSSILPNAVLSLTPTQLREVGISGPKATYIHDLSRKYVNGFLSDSSIIEMDDEMLYEKLMSVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVEKLYGLKGLPSPSQMEVLCEKWKPYRSVGSSYMYRSLLESRWFTCQFDC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00748 278 Pfam HhH-GPD superfamily base excision DNA repair protein 108 252 IPR003265 GO:0006284
Tsu05g00748 278 MobiDBLite consensus disorder prediction 7 26 - -
Tsu05g00748 278 CDD ENDO3c 107 262 IPR003265 GO:0006284
Tsu05g00748 278 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 1 269 - -
Tsu05g00748 278 Gene3D - 76 264 - -
Tsu05g00748 278 SMART endo3end 112 267 IPR003265 GO:0006284
Tsu05g00748 278 MobiDBLite consensus disorder prediction 1 58 - -
Tsu05g00748 278 Gene3D Hypothetical protein; domain 2 101 214 - -
Tsu05g00748 278 SUPERFAMILY DNA-glycosylase 93 268 IPR011257 GO:0003824|GO:0006281
Tsu05g00748 278 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00748 Tsu-Chr5 6314374 6315445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00748 K01247 - pvy:116113060 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00336 07 2543999 2549127 Tsu05g00748 05 6314374 6315445 ECH
Tsu05g00748 05 6314374 6315445 Tsu05g00748 05 6314374 6315445 ECH