Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00737 ATGTGGCGTTGCGTCGCTCGTGGACTTCGCGTTCCACCTTCAAACAACAGATCCAATCACTCACTCGGATCTCATCTTTCTAGATTCTTCTCCAGTGGTGTAAATTCGTCTTACACCGTTGTAGATCATACTTATGATGCTGTTGTGGTTGGTGCTGGTGGTGCTGGATTAAGAGCTGCTATTGGACTCTCGGAACATGGATTTAATACTGCTTGTATTACCAAGCTTTTTCCAACTCGTTCACATACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTTATTGAACTAGAGAATTACGGATTGCCTTTTTCTCGAACAGAGGAGGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGCGCTGCTGATCGAACTGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCCTTGGATCTTTTAATGAACAGTGATGGTAGTTGCCAAGGAGTAATTGCCTTAAATATGGAGGATGGCACACTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCGTACTTCTCAGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGCTGCACGTGCTGGGATCGGGCTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCAGGTTGCCTTATTACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGATTTATGGAACGATATGCTCCTACAGCCAAGGATCTTGCATCCAGAGATGTAGTTTCAAGATCAATGACTATGGAGATCCGGGAAGGTCGCGGTGTAGGACCCATGAAGGATCACATCTATCTACACTTGAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACCGTGCATTATAACATGGGTGGAATTCCCACAAATCATCATGGAGAGGTAGTTACCATTAAAGGTAACGATCCAGATGCATTAGTTCCTGGGTTGATGGCTGCTGGGGAAGCAGCCTGTGCATCAGTTCATGGCGCCAACAGACTTGGTGCAAATTCACTTTTGgatattgttgtttttggtaGAGCTTGTGCAAATAGAGTTGCAGAAATTAATAAGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACGATTGCTTGGCTGGACAAATTgagaaattcaaatggatcatTACCTACTTCAAAAATTCGGTTGAATATGCAGCGAGTAATGCAAAATAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTAATCTATTTTTCGCCAATACTGCTTTATTATGCaaccattttcttttcttttcttttaccAAGTGTGTGTTTTACCTTTGCTGA 1644 0.4252 MWRCVARGLRVPPSNNRSNHSLGSHLSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEINKPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGNLFFANTALLCNHFLFFSFTKCVFYLC 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00737 547 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 46 520 IPR014006 GO:0016627|GO:0022900|GO:0050660
Tsu05g00737 547 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 284 387 IPR027477 -
Tsu05g00737 547 Gene3D - 46 453 IPR036188 -
Tsu05g00737 547 Gene3D - 469 523 - -
Tsu05g00737 547 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 80 89 IPR003952 GO:0016491
Tsu05g00737 547 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 521 - -
Tsu05g00737 547 Pfam FAD binding domain 46 442 IPR003953 -
Tsu05g00737 547 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 481 521 IPR037099 GO:0016491
Tsu05g00737 547 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 521 IPR030664 -
Tsu05g00737 547 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 43 520 IPR011281 GO:0006099|GO:0016627|GO:0050660
Tsu05g00737 547 PIRSF SDHA_APRA_LASPO 35 526 - -
Tsu05g00737 547 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 274 392 IPR027477 -
Tsu05g00737 547 SUPERFAMILY FAD/NAD(P)-binding domain 37 465 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00737 Tsu-Chr5 6228029 6233348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00737 K00234 - gmx:100818379 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00737 05 6228029 6233348 Tsu05g00737 05 6228029 6233348 ECH
Tsu05g00737 05 6228029 6233348 Tsu04g03385 04 43007152 43014363 PCT