Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03385 ATGTGGCGTTGCGTGGCTCGTACTATTTCCAATAGATCCAATCAAAATCTTCAACCACTTAGATCTCACCTTTCAAGATTTTTCTCTAGTGGTGGAAATTCGTCGTACAATGTGGTGGATCATAAATACGATGCGGTTGTTGTAGGTGCTGGTGGTGCAGGGTTAAGAGCTGCTATTGGACTTTCAGAACATGGTTTCAATACTGCTTGTATTACCAAGCTTTTTCCAACTCGTTCTCACACCGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTACGACACTGTCAAGGGAAGTGATTGGCTAGGAGACCAAGATGCCATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAGAATTATGGATTGCCATTTTCACGAACTGAAGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTAAATGCAGATTTTGGAGTAGTGATGTTAGCTTTTATACTCCAAGAGTTCTGATCTTGAATTCCTTATGTTGCTATTCTATAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCCGATCGAACAGGGCACGCTTTACTTCACACTCTCTATGGCCAAGCTATGAGGCACAATACACAGTTTTTTGTGGAATATTTTGCTCTGGATCTATTAATGAACAGTGATGGTACTTGCCAAGGAGTAATTGCCTTGAATATGGAGGATGGAACATTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACTGGGGGTTATGGCAGAGCATACTTTTCTGCAACTTCAGCACATACATGCACTGGAGATGGAAATGCCATGGTTGCTCGTGCTGGAATACCGCTCGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATTTATGGAGCTGGTTGCCTTATCACAGAAGgATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGTGAAGGTGAGAGATTTATGGAACGGTATGCTCCTACTGCGAAGGATCTCGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAAATTCGGGAAGGTCGTGGTGTAGGACCTGAGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTTCTCAAGGAGAGACTACCTGGTATATCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTACCAACTGTGCATTATAACATGGGTGGTATCCCCACTAATCATCATGGAGAGgtgGTTACCATTAAAGGTGACAATCCAGATGAAATAGTTCCTGGACTAATGGCTGCTGGGGAAACAGCATGTGCGTCAGTCCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGACATTGTTGTTTTTGGTAGAGCTTGTGCAAACAGAGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTATGAAAACAATTGCTTGGCTTGACAAATTGAGAAACTCAAACGGATCATTGCCAACTTCAAAAATTAGGTTGAATATGCAAAAAATAATGCAAAACAATGCTGCTGTGTTCCGCACACAAGAAACATTAGAAGAAGGTTGTCAATTGATTGATGGAGCATGGGAGAGCTTTCATGATGTCAAGTTGAAGGACCGGAGTTTGATATGGAACTCTGACCTTATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATTACCATGCACTCTGCCGAAGCCAGGAAAGAGAGCAGAGGTGCTCATGCCCGCGAAGACTTCACGAAAAGAGATGATGAGAAGTGGATGAAACACACGTTGGGATATTGGGAAAATGAGAAGGTCCGGTTAGATTATAGGCCGGTACACATGAATACTTTGGACGACGAGGTTGAATCGTTCCCTCCTAAAGCTCGTGTCTATTAA 1968 0.4294 MWRCVARTISNRSNQNLQPLRSHLSRFFSSGGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGKCRFWSSDVSFYTPRVLILNSLCCYSIGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDEIVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQKIMQNNAAVFRTQETLEEGCQLIDGAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03385 655 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 300 418 IPR027477 -
Tsu04g03385 655 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 19 166 IPR030664 -
Tsu04g03385 655 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 189 655 - -
Tsu04g03385 655 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 44 655 IPR014006 GO:0016627|GO:0022900|GO:0050660
Tsu04g03385 655 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 310 413 IPR027477 -
Tsu04g03385 655 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 19 166 - -
Tsu04g03385 655 PIRSF SDHA_APRA_LASPO 33 645 - -
Tsu04g03385 655 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 78 87 IPR003952 GO:0016491
Tsu04g03385 655 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 189 655 IPR030664 -
Tsu04g03385 655 Gene3D succinate dehydrogenase protein domain 606 655 - -
Tsu04g03385 655 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 514 655 IPR037099 GO:0016491
Tsu04g03385 655 Gene3D - 44 479 IPR036188 -
Tsu04g03385 655 Pfam Fumarate reductase flavoprotein C-term 524 655 IPR015939 GO:0016491
Tsu04g03385 655 Gene3D - 495 605 - -
Tsu04g03385 655 SUPERFAMILY FAD/NAD(P)-binding domain 37 491 IPR036188 -
Tsu04g03385 655 Pfam FAD binding domain 44 468 IPR003953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03385 Tsu-Chr4 43007152 43014363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03385 K00234 - gmx:100802169 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00737 05 6228029 6233348 Tsu04g03385 04 43007152 43014363 PCT