Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00701 ATGCAACCTTCATattgtttgaaagaaaataaacccTGTGTTGGTTGGGTTAAAAATTACTTCAGTGATTGTCTCTGTAATATTAATGATGAAATTTCATTTGCTTTTGGTTTCATTAGTTTAATTTGTTGGGGTGTTGCTGAAATTCctcaaattattactaattttcGTGCTAAGTCTAGTCATGGTGTTTCTATTGTTTTTCTTCTCACTTGGGTTGCTGGAGACATATTTAACTTGGTGGGTTGTCTTCTAGAACCAGCTACGTTGCCAACCCAATACTACACAGCTCTGCTTTACACGATCACTACAATCGTTTTAGTATTGCAAAGCTTCTATTATGACTACATCTACAAATGCTGCAAGCGTCGTCAAAAGATCAACACCGAAGAGGCTtatgaagaagagaaaaaaccATTGAAACCAAAACAAAGGATTTATGAGTCAGGAATTCCAATAAGAAGCGGAAAACATAGAGCAATACCTAAACCAGAATACTACTATGGGTCAGCAAGATCATTGGCTGGTAATGTCACTCCACCATCTCGCACTTACATGAGAGCTGCTAAAAGTGGACCTTCAGCTATGGGAATGAACGAAGATTCGTCGTCTTCTGATGATGAGGCACATTCAGTTCCTGCAACTCAGCCGAGACAAATCCCTCGTTCTGCGGGAGCCTATGGAACATTTCTAGCAGCATCGATTAACTTGCCTATGCAGGGTAATGCTTTGAAAGTGGGATACATGAGACTGAGTGGACGAAAACTACTCTCGCAGGAACATGTAACACACAGTGCATTGGGTCAATGGTTAGGATGGCTCATGGCTGCTATCTATACCGGCGGTCGCATACCTCAAATATGGTTAAATATCAAAAGAGGGAGTGTTGAGGGCTTAAATCCTTTCATGTTCATCTTTGCATTGATTGCCAATTCTGCTTATGTGGGAAGTATTCTTGTAAGAACTACAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTGTTGGATGCCATTGTTTGTGTGGCATTGGACCTATTTATAATATTGCAGTACATCAATTACAGATACCATCGAAAGAcaactccaagtgatgattatGGTAATTGTGATGACTACAAAGAAGCCAGAAAAACTATTGTTTCTTAA 1149 0.3734 MQPSYCLKENKPCVGWVKNYFSDCLCNINDEISFAFGFISLICWGVAEIPQIITNFRAKSSHGVSIVFLLTWVAGDIFNLVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKCCKRRQKINTEEAYEEEKKPLKPKQRIYESGIPIRSGKHRAIPKPEYYYGSARSLAGNVTPPSRTYMRAAKSGPSAMGMNEDSSSSDDEAHSVPATQPRQIPRSAGAYGTFLAASINLPMQGNALKVGYMRLSGRKLLSQEHVTHSALGQWLGWLMAAIYTGGRIPQIWLNIKRGSVEGLNPFMFIFALIANSAYVGSILVRTTEWESIKANMPWLLDAIVCVALDLFIILQYINYRYHRKTTPSDDYGNCDDYKEARKTIVS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00701 382 SMART ctns 46 77 IPR006603 -
Tsu05g00701 382 SMART ctns 281 312 IPR006603 -
Tsu05g00701 382 Pfam PQ loop repeat 32 88 IPR006603 -
Tsu05g00701 382 Pfam PQ loop repeat 267 325 IPR006603 -
Tsu05g00701 382 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 379 - -
Tsu05g00701 382 Gene3D - 268 366 - -
Tsu05g00701 382 Gene3D - 33 133 - -
Tsu05g00701 382 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 1 379 - -
Tsu05g00701 382 MobiDBLite consensus disorder prediction 182 220 - -
Tsu05g00701 382 MobiDBLite consensus disorder prediction 196 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00701 Tsu-Chr5 5905871 5910891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00701 K23678 - gmx:100780977 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00701 05 5905871 5910891 Tsu05g00701 05 5905871 5910891 ECH
Tsu05g00701 05 5905871 5910891 Tsu04g03358 04 42736359 42741615 PCT