Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00450 ATGGCTGTTCAAGCTCAATACCCATCCAATGTACATGAATATTCATTACAACCACAACCTGATCAATCCAATATCATGTTATTCAACACTCCAGctACTAATAATTCTCGGAAAAGAGGAAGAGAAACAGGGGCTATACAATCTTCTCACAACATTATGAATCCTTTCTCTTTGCAATCTCACTCTCCTCATCTCATAGACCTCACTCAACTCCATAatcaacaacagcaacaacaacatcaaaacaTAGTCTCAACCGGTTTAGGTTTATCCTTTGgtgatcaacaacaacaacagcaaagACTACAAtttcaacatcaacaacaacaacaacaagaaaatGGGTTTCACTCATCTCAATTTCTATCTCTATTATCTCATGGCTTATCttcacaaatcaaacaacaaaaagatgAAATTGACCAATTCCTTCAAGCCCAGggAGAAGAGCTGCAACGGACATTAGAGGAAAAGAGACAGAGAAACTATAGAGCAATAATAAAGACAGCAGAAGAAACGGTGGCGCGTCgattaagagaaaaagaaatagattTAGAAAAAGCTACGCGCAGAAACATGGAGTTAGAATCACGCGCGGCATATCTTAGAACTGAAATGCAACTTTGGCAAGCAAAAGCTAAAGAACAAGAAGCAACAGCTATTTCTCTTCAAAACCAACTGCATCATGCTATGATGAACGGTGGCGTAGAAAATAGAGGAGAAGAAGGATGTGGGCTATCATGCGCATTAGGTGTTGAAGGTCAAGCTGAAGATGCGGAATCGGGGTATATTGATCCGGACCGGGTTGTTATTTCGGGTCCTAAATGTAAAGGTTGTGAAAAACGGGTTGCTTCGGTTGTTGTGTTGCCGTGTCGTCACTTATGTGTTTGTAACGAATGCGACACACATTTCCGTGTTTGCCCCGTTTGTCTCACCGTTAAAAATTCAACCGTTGAGATTTATCTATCTTAa 972 0.3529 MAVQAQYPSNVHEYSLQPQPDQSNIMLFNTPATNNSRKRGRETGAIQSSHNIMNPFSLQSHSPHLIDLTQLHNQQQQQQHQNIVSTGLGLSFGDQQQQQQRLQFQHQQQQQQENGFHSSQFLSLLSHGLSSQIKQQKDEIDQFLQAQGEELQRTLEEKRQRNYRAIIKTAEETVARRLREKEIDLEKATRRNMELESRAAYLRTEMQLWQAKAKEQEATAISLQNQLHHAMMNGGVENRGEEGCGLSCALGVEGQAEDAESGYIDPDRVVISGPKCKGCEKRVASVVVLPCRHLCVCNECDTHFRVCPVCLTVKNSTVEIYLS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00450 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 323 IPR013083 -
Tsu05g00450 323 ProSiteProfiles Zinc finger RING-type profile. 276 310 IPR001841 -
Tsu05g00450 323 Coils Coil 171 226 - -
Tsu05g00450 323 PIRSF SBP1_RNase_bind 1 323 IPR017066 -
Tsu05g00450 323 Pfam Zinc finger, C3HC4 type (RING finger) 275 312 - -
Tsu05g00450 323 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 322 IPR017066 -
Tsu05g00450 323 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g00450 323 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 322 - -
Tsu05g00450 323 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00450 Tsu-Chr5 3396632 3398761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00450 276 312 Miscellaneous Gene Families AT4G39050 40.541 4.83e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00450 K19042 - gmx:100797727 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00450 05 3396632 3398761 Tsu04g02282 04 25466226 25467866 PCT