Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02282 ATGGCTGTTCAAGCTCAATATCCATCCAATGTCCTCTTTCTTAACAACAATAACAGAAATGGACAAGAAGGACATGATCATGAGTACTCCTCCTTACAACCACAACCAccaggaggaggaggagaatCATTAGGACTATCACTTCTTGATCATCCCAACCACATCCtatgcaacaacaacaacacaaATACTAATTCTTCTCGCAAGAGAGGAAGAGAAACACCAACAACAGGAACAGGAACAACAGAACACAACGTTATCAATCATCATTTCTCTTTACAACAACAATCTCAACCTTCACAAATTATTCATCTTTCTCAACTccataatcatcatcaacatcaacaacaacaacaaaatgttGTCTCCACTGGCCTTCGTTTATCATTTGatgatcatcatcaacaacaacaaagattacaattacaacttcatcaacatcaacaatctcaacaacaacaacaacaaggttgTCACTCCTCTACTTTCTTATCTCTGTTATCACAAGGACTTGTTTCTCAAATCAAACAACACCGTGATGAATTAGACCAATTCATTCAAGCCCAGGGAGAGAATCTGCGGCGGACATTGGCGGAGAAAAGGCAGAGACATTACAGGGAGCTACTAAACGCGGCGGAGGAAGCGGTGGCGCAACGACTCAGAGAAAAAGAAGCGGAATTCACAAAAGCCACGCGCAAGAACGCAGAGTTAGAAGCGCGTGCGGCCCAATTAACCATGGAGGCCCAATTATGGCAAGCAAAAGCCCGGGCCCAAGAAGCCACGGCAGCATCTCTTCAGGCCCAGCTACAGCAAACAATAATGTGTCAAACCGGCGAGGAAGCCGGAGGAGGCGGTGTTTCGTGTGCCGTGGAAGGACAGGCTGAGGATGCCGAATCAGCATATATCGATCCGGATAGAGTGGTTGTTGTTACGGAGGCGCGTGGGAAATGTAGAGGGTGTGAGAAGCGCGTGGCGTCGGTGGTTGTTTTGCCTTGTCGGCATTTGTGCATATGTACAGAATGCGATGCGCATTTCAGAGCATGCCCTGTTTGCTTTACTCTCAAGAATTCAACCGTTGAGGTTTTTCTCTCttag 1095 0.4 MAVQAQYPSNVLFLNNNNRNGQEGHDHEYSSLQPQPPGGGGESLGLSLLDHPNHILCNNNNTNTNSSRKRGRETPTTGTGTTEHNVINHHFSLQQQSQPSQIIHLSQLHNHHQHQQQQQNVVSTGLRLSFDDHHQQQQRLQLQLHQHQQSQQQQQQGCHSSTFLSLLSQGLVSQIKQHRDELDQFIQAQGENLRRTLAEKRQRHYRELLNAAEEAVAQRLREKEAEFTKATRKNAELEARAAQLTMEAQLWQAKARAQEATAASLQAQLQQTIMCQTGEEAGGGGVSCAVEGQAEDAESAYIDPDRVVVVTEARGKCRGCEKRVASVVVLPCRHLCICTECDAHFRACPVCFTLKNSTVEVFLS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02282 364 ProSiteProfiles Zinc finger RING-type profile. 317 351 IPR001841 -
Tsu04g02282 364 Pfam Zinc finger, C3HC4 type (RING finger) 315 351 - -
Tsu04g02282 364 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 363 - -
Tsu04g02282 364 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g02282 364 PIRSF SBP1_RNase_bind 1 364 IPR017066 -
Tsu04g02282 364 MobiDBLite consensus disorder prediction 58 81 - -
Tsu04g02282 364 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 363 IPR017066 -
Tsu04g02282 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 364 IPR013083 -
Tsu04g02282 364 MobiDBLite consensus disorder prediction 1 44 - -
Tsu04g02282 364 Coils Coil 206 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02282 Tsu-Chr4 25466226 25467866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02282 K19042 - gmx:100788924 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00450 05 3396632 3398761 Tsu04g02282 04 25466226 25467866 PCT