Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00443 ATGTACAGAGAGCGAGGAAGCGTTGGATCCAAAGCCGAGGTTGCTTCCGTTGATCGGAAACGAATCAACGACGTCCTCGACAAACAACTTGAAAGATCCTCACCGTCCACTTCAAGGACCATCAACGGTAAAGATAGGTCCTCTTCTTCGTCTCTCTTAACCGCTAAAGATCATAGGGACCCTCGCTCCACCTCCGTCACTCTTCCTAAAAACGCTTCCGATGATGCATTGGCTGCAGAGGAATCTGAAACCGACAGTGAAGAGTCTGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCGTGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGTGAGGTTGACGATGATTACATCCAAGACGACTTCAATCTGTGCGGATTGAGCAGTCAAGTTCCTTATTATGATTATGCGcttgatttgattttggatgTTGAGTCCTCCCATGGTGACATGTTTACTGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCCCGGTATATATTGACCAGCAAAGGAATGGCTGCCATGTTGGACAAGTACAAGAACTATGACTTTGGCAGATGCCCAAGAGTTTACTGCTCCGGACAACCCTGCCTTCCAGTTGGTCAGTCCGACATTCCTAGGTCCAGCACTGTGAAGATATATTGCCCGAGGTGTGAAGACATTTACTATCCTCGTTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAACTATGTTCCGAGAGTTTTTGGATTCAAACTTCACAAGCCATAA 864 0.441 MYRERGSVGSKAEVASVDRKRINDVLDKQLERSSPSTSRTINGKDRSSSSSLLTAKDHRDPRSTSVTLPKNASDDALAAEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQNYVPRVFGFKLHKP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00443 287 Pfam Casein kinase II regulatory subunit 100 283 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 SUPERFAMILY Casein kinase II beta subunit 98 286 IPR035991 GO:0005956|GO:0019887
Tsu05g00443 287 SMART CK_II_beta_2 100 283 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 ProSitePatterns Casein kinase II regulatory subunit signature. 201 232 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 93 197 IPR016149 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 247 264 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 219 240 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 100 116 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 172 193 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 117 131 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 PRINTS Casein kinase II regulatory subunit family signature 197 218 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 MobiDBLite consensus disorder prediction 78 94 - -
Tsu05g00443 287 Gene3D - 198 272 - -
Tsu05g00443 287 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 286 - -
Tsu05g00443 287 MobiDBLite consensus disorder prediction 1 96 - -
Tsu05g00443 287 MobiDBLite consensus disorder prediction 29 50 - -
Tsu05g00443 287 PANTHER CASEIN KINASE II SUBUNIT BETA 1 286 IPR000704 GO:0005956|GO:0019887
Tsu05g00443 287 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00443 Tsu-Chr5 3349327 3353895 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00443 K03115 - gmx:100799304 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00443 05 3349327 3353895 Tsu05g00443 05 3349327 3353895 ECH
Tsu05g00443 05 3349327 3353895 Tsu04g02296 04 25627209 25630112 PCT