Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02296 ATGTACAAAGAAAGAGGCTTTTCTGCTTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGATAAACAACTCGAACGATCTTCTCCTTCAACTTCTCAGGAATCTGAAACAGACAGTGAAGAATCGGATGTGAGTGGTTCTGATGGAGAAGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGAAATGAGTTCTTTTGTGAGGTTGATGATGATTACATTCAAGATGACTTCAACCTTTGTGGATTAAGCAGCCAAGTGCCTTACTATGATTATGCTCTCGATTTGATTTTGGATGTTGAATCCTCTCATGGTGATATGTTCACAGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCACGCACGATACATACTGACAAGCAAAGGAATGGCTGCCATGCTTGACAAGTACAAGAGCTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCGGACATTCCTAGGTCAAGTACTGTGAAAATATATTGTCCTAGGTGTGAGGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTCTTCCTGATGACATATGGACAACTGAAGCCACAGAAACCATCTCAGGGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 729 0.4198 MYKERGFSASKSEDRKRINDVLDKQLERSSPSTSQESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGMAAMLDKYKSYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKLHKP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02296 242 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g02296 242 MobiDBLite consensus disorder prediction 1 51 - -
Tsu04g02296 242 SUPERFAMILY Casein kinase II beta subunit 53 241 IPR035991 GO:0005956|GO:0019887
Tsu04g02296 242 PANTHER CASEIN KINASE II SUBUNIT BETA 35 241 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PANTHER CASEIN KINASE II SUBUNIT BETA 1 35 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 48 152 IPR016149 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 55 71 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 72 86 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 127 148 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 174 195 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 152 173 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PRINTS Casein kinase II regulatory subunit family signature 202 219 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PANTHER CASEIN KINASE II SUBUNIT BETA-2 35 241 - -
Tsu04g02296 242 SMART CK_II_beta_2 55 238 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 Gene3D - 153 227 - -
Tsu04g02296 242 Pfam Casein kinase II regulatory subunit 55 238 IPR000704 GO:0005956|GO:0019887
Tsu04g02296 242 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 35 - -
Tsu04g02296 242 ProSitePatterns Casein kinase II regulatory subunit signature. 156 187 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02296 Tsu-Chr4 25627209 25630112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02296 K03115 - gmx:100784848 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02296 04 25627209 25630112 Tsu04g02296 04 25627209 25630112 ECH
Tsu05g00443 05 3349327 3353895 Tsu04g02296 04 25627209 25630112 PCT