Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00439 ATGGGTTGCATACACCCTAAAGGAAAAAGATTTCCAGGACAGCAGAATCCAATAATTCTTGCATCAGAAACAGCTTTTAGTGTTAATGATGTTGAAGCATTATTTGAGCTTTTTAAGAGCATCAGTGGGTCGGTCGTTGATGATGGACTAATAAGTAAGgaagaatttcaattggcaattttcaataataaaacAAAGGAGAATCTCTTCACTAGTCGGATCTTTGATCTATTTGATGTGAAGAGGAGAGGAGTAATTGACTTTAGTGACTTTGTGAGAGCACTCAATGTCTTCCATCCAAATGCCCCACAAGAAATCAAGATAGATTTTTCATTTAAACTCTATGATTTGGATAATACGGGTTTTATAGAGCGAGATGAGGTCAAGCAAATGATAAATGCACTTTTATGTGAGTCTGAAATAAAGTTGAGTGATGACATGATAGAAACAATTCTTCAGAAAaCTTTTATGGATGCTGACCCAAACCAAGATGGAAAAATAGACAAATCCGAGTGGCATAACTTTGTTTCTCAAAATCCGTCACTGTTAAAAATCATGACACTCCCCTATCTAAGGGACATAACAACAAGTTTCCCTAGCTTTGTATTTAACTCAAATGTGGATGATGATATTGCTGCTTAG 642 0.3442 MGCIHPKGKRFPGQQNPIILASETAFSVNDVEALFELFKSISGSVVDDGLISKEEFQLAIFNNKTKENLFTSRIFDLFDVKRRGVIDFSDFVRALNVFHPNAPQEIKIDFSFKLYDLDNTGFIERDEVKQMINALLCESEIKLSDDMIETILQKTFMDADPNQDGKIDKSEWHNFVSQNPSLLKIMTLPYLRDITTSFPSFVFNSNVDDDIAA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00439 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Tsu05g00439 213 SUPERFAMILY EF-hand 21 201 IPR011992 -
Tsu05g00439 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Tsu05g00439 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tsu05g00439 213 SMART efh_1 107 135 IPR002048 GO:0005509
Tsu05g00439 213 SMART efh_1 151 179 IPR002048 GO:0005509
Tsu05g00439 213 SMART efh_1 70 98 IPR002048 GO:0005509
Tsu05g00439 213 CDD EFh 107 177 IPR002048 GO:0005509
Tsu05g00439 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Tsu05g00439 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Tsu05g00439 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Tsu05g00439 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Tsu05g00439 213 Gene3D - 18 210 - -
Tsu05g00439 213 PRINTS Recoverin family signature 121 139 - -
Tsu05g00439 213 PRINTS Recoverin family signature 167 187 - -
Tsu05g00439 213 PRINTS Recoverin family signature 74 95 - -
Tsu05g00439 213 PANTHER CALCINEURIN B-LIKE PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00439 Tsu-Chr5 3326923 3329718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00439 1 209 EF-hand Containing Proteins AT4G17615 73.333 1.11e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00439 K06268 - gmx:100779020 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00439 05 3326923 3329718 Tsu05g00439 05 3326923 3329718 ECH
Tsu05g00439 05 3326923 3329718 Tsu04g02301 04 25679779 25683796 PCT