Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02301 ATGGGCTGTTTCAACTCTAAGCCAACAAGACAGTTTCCTGGGAAGGAGGATCCGGTAATTCTTGCATCACAGACAGCTTTCACTGTCAGTGAGGTCGAAGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCCATCTTCAAGaataagaaaaaggaaaatatcttTGCTAATCGGATCTTTGATCTATTTGATGTCAAGAAGAAGGGGGTTATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCAGCACTAGAAGACAAGATAGATTTCTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGTCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTTCGAGTCTGAAATGAAGTTGGCGGATGATGTTATAGAATCAATTCTAGACAAGACTTTCTTGGATGCTGACTTGAACCAAGATGGCAAAATTGACATTGTCGAGTGGCAAAAATTTGTTTCTGAAAATCCGTCACTGCTCAAAATCATGACTCTTCCCTACTTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAACTCTAACGTGGATGAACTTGTTGCTTGA 642 0.3769 MGCFNSKPTRQFPGKEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNKKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLHNTGFIERQEVKQMLIALLFESEMKLADDVIESILDKTFLDADLNQDGKIDIVEWQKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDELVA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02301 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Tsu04g02301 213 SMART efh_1 71 99 IPR002048 GO:0005509
Tsu04g02301 213 SMART efh_1 108 136 IPR002048 GO:0005509
Tsu04g02301 213 SMART efh_1 152 180 IPR002048 GO:0005509
Tsu04g02301 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Tsu04g02301 213 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
Tsu04g02301 213 PANTHER CALCINEURIN B 1 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tsu04g02301 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Tsu04g02301 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 211 - -
Tsu04g02301 213 PRINTS Recoverin family signature 168 188 - -
Tsu04g02301 213 PRINTS Recoverin family signature 75 96 - -
Tsu04g02301 213 PRINTS Recoverin family signature 122 140 - -
Tsu04g02301 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Tsu04g02301 213 CDD EFh 108 178 IPR002048 GO:0005509
Tsu04g02301 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Tsu04g02301 213 Gene3D - 18 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02301 Tsu-Chr4 25679779 25683796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02301 1 213 EF-hand Containing Proteins AT4G17615 80.282 1.91e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02301 K06268 - gmx:100527380 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02301 04 25679779 25683796 Tsu04g02301 04 25679779 25683796 ECH
Tsu05g00439 05 3326923 3329718 Tsu04g02301 04 25679779 25683796 PCT