Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00377 ATGGCTTCTCCCCTGTTTCTACTCTGTTTCATACTCTGTTTTTCACTCTCATCACAAATGATCCTATTACCCTTAACACACTCATTTTCCAAAACCCAATTCAACACTACCCACCACCTCCTCAAATCAACCTCAACCCGTTCCTCCACACGCTTCCGCCACCAACACAACCACAACAAACACCAAACCCAAGTTTCTCTCCCACTTTCACCAGGAAGTGATTACACACTTTCCTTCAACCTAGGTTCAAACCCGTCACAACTCATAACTCTCTACATGGACACAGGTAGTGACCTTGTTTGGTTCCCTTGTTCACCTTTCGAATGTATCCTCTGTGAAGGAAAACCACAAACAACAAAACCAGCAAATATCACAAAAGAAGCACACTCTGTTTCTTGTCAATCCCCCGCATGTTCTTCAGCACATTCAACTATATCTTCTAGTAATCTTTGTGCTATTTCTCGTTGTCCTTTAGACTTCATTGAAACTTCTGATTGTTCTAATTTTTCTTGCCCTCCATTTTACTATGCTTATGGCGATGGAAGCTTCGTAGCTAATCTCTATCGTCACacactttttctttcttctcttcatcttcaaaaTTTCACTTTTGGTTGTGCTCACACTGCACTTGCTGAACCTACCGGCGTCGCCGGTTTCGGCCGTGGAATTCTATCTCTTCCGGCTCAGCTTTCTACTCTTTCACCTCATTTGGGAAACCGTTTTTCTTATTGTTTAGTATCTCATTCTTTCGACGGTGACCGAGTTCGTCATCCGAGTCCACTCATTCTCGGCCGCCACGACGATACCACCACCGCCGGAGAACCTGTTGAGTTTGTCTACACTTCAATGCTTTCAAACCCAAAGCATCCTTATTACTACTGTGTGGGACTCGCCGGAATAACAGTCGGAAAGAAAATGGTACCGGCGCCGGAGATTCTTACAAGGGTCGACGTTAAAGGTAACGGAGGGATGGTTGTTGATTCAGGGACAACGTTTACGATGTTGCCGGAGAGTTTTTATAACGCGGTGGTTACTGAGTTCGATAAACGAGTTGGACGAGTTAATAAACGAGCGAGTGAAGTTGAAACTAAAACGGGTCTCGGACCGTGTTATTATTTAAACGGGTTATCACAAATACCAATGATGACGTTGCATTTTGTTGGGAATAATTCGGGTGTGGTGTTACCTAGGAAGAATTacttttatgaatttttggaCGGTGGTGATGGGGCTAGAAAGAAAAGTAAAGTGGGGTGTATGATGTTGATGAACGGTGGAGATGAAACTGAGTTAGATGGTGGACCTGGGGCTACTTTAGGGAATTATCAACAACAAGGGTTTGAGGTTGTTTATGATTTGGAGAAAGAGCGCGTGGGTTTCGCGAAGAAAGAGTGCGCGTTGCTTTGGGATAGTCTTAACAATGTGAAAAACTAA 1437 0.4266 MASPLFLLCFILCFSLSSQMILLPLTHSFSKTQFNTTHHLLKSTSTRSSTRFRHQHNHNKHQTQVSLPLSPGSDYTLSFNLGSNPSQLITLYMDTGSDLVWFPCSPFECILCEGKPQTTKPANITKEAHSVSCQSPACSSAHSTISSSNLCAISRCPLDFIETSDCSNFSCPPFYYAYGDGSFVANLYRHTLFLSSLHLQNFTFGCAHTALAEPTGVAGFGRGILSLPAQLSTLSPHLGNRFSYCLVSHSFDGDRVRHPSPLILGRHDDTTTAGEPVEFVYTSMLSNPKHPYYYCVGLAGITVGKKMVPAPEILTRVDVKGNGGMVVDSGTTFTMLPESFYNAVVTEFDKRVGRVNKRASEVETKTGLGPCYYLNGLSQIPMMTLHFVGNNSGVVLPRKNYFYEFLDGGDGARKKSKVGCMMLMNGGDETELDGGPGATLGNYQQQGFEVVYDLEKERVGFAKKECALLWDSLNNVKN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00377 478 Pfam Xylanase inhibitor C-terminal 294 462 IPR032799 -
Tsu05g00377 478 ProSiteProfiles Peptidase family A1 domain profile. 75 462 IPR033121 -
Tsu05g00377 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 325 336 IPR001969 GO:0004190|GO:0006508
Tsu05g00377 478 Gene3D Acid Proteases 270 470 IPR021109 -
Tsu05g00377 478 Gene3D Acid Proteases 47 256 IPR021109 -
Tsu05g00377 478 CDD pepsin_A_like_plant 75 466 IPR034161 -
Tsu05g00377 478 PANTHER ASPARTYL PROTEASES 4 475 IPR001461 GO:0004190|GO:0006508
Tsu05g00377 478 SUPERFAMILY Acid proteases 70 471 IPR021109 -
Tsu05g00377 478 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 475 - -
Tsu05g00377 478 Pfam Xylanase inhibitor N-terminal 75 249 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00377 Tsu-Chr5 2817440 2819211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00377 43 469 Miscellaneous Gene Families AT1G77480 25.828 2.26e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00377 - - gmx:100807884 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00377 05 2817440 2819211 Tsu05g00377 05 2817440 2819211 ECH
Tsu05g00377 05 2817440 2819211 Tsu04g02379 04 26618270 26619804 PCT