Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02379 ATGGCTTCTCCTCTGTTTTTCTTCCTCCTCATCACACTCTCCATTCCACATCCTTCATCACAAATCATACTATTACCCCTAACACACTCACTCTCCAAAACCCAATTCAACACAACCCACCACCTCCTCAAATCCACCACCACTCGTTCCACATCACGCTTCCACCACCACTACAAACACCACCACCAGCACCAACTCTCTCTCCCACTCTCACCAGGAACCGATTACACTCTCTCCTTCAACTTCGGCCCCTACTCCCAACCCATAACTCTCTACATGGACACTGGAAGCGACCTTGTCTGGTTCCCCTGCACCCCATTCAACTGTATACTCTGCGAATTCAAACCAAACCCTTCACCTTTATCTTCTTCTCCACCCACCAACATCTCTCACAGCACCCCCATTTCATGCAACTCAAAAGCATGCTCTACAGCACACAACTCCATCTCTTCTTCTGATCTCTGCACAATGGCTCATTGTCCATTAGACTCCATTGAAACAAAAGATTGTGGTTCTTTTCACTGTCCACCTTTTTACTATGCTTACGGCGATGGAAGCTTAATAGCTTCGCTCTATCGTGATAccctttctctttcttctatcAAATTTCGAAACTTTACATTCGGTTGTGCTCATACCACTTTTTCAGAACCCACCGGCGTTGCTGGTTTTGGTCGTGGGTTACTCTCTTTTCCTGCTCAGTTAGCTTCTCATTCTCCTCAACTTGGTAACCGTTTCTCTTATTGCTTAGTTTCTCATTCTTTTCGCCATGAACGAGTTAGAAAACCGAGTCCACTCATTCTGGGTCGTTACGAAGATGAAAAACAGAGTAATGGTAATGAAGTTGTTGAGTTTGTTTATACTTCAATGCTTGAGAATCCAAAGCATTCTTATTTTTACTGTGTTGGATTGAAAGGAATTATTGTCGGAAAAAAGAAGATTCCGGCGCCGGAGATTTTGAGGAAGGTGAATAAGAGAGGTGACGGCGGTGTAGTTGTGGATTCCGGTACGACGTTTACAATGTTGCCGGCGAGGTTTTATGATTCTGTGGTGGCGGAGTTTGACCGTCGTGTTGGGAGACTCAACCGGCGAGCTGGTGAGGTTGAGATGAAAACGGGGCTTTCGCCGTGTTATTATTTGGATACGGCGGCGGTGGAAGTTCCGGCGGTGACACTGCGTTTTGTTGGGAGGAATTCAAGTGTGGTGTTGCCTAGGAAGAATTATTTCTATGAGTTTTTGGACGGTGGGGATGGATTGAGGAGGAAAGAGAGAGTGGGGtgtttgatgttgatgaacGGTGGAGATGAGTTTGAAGTGAGTGGTGGACCTGGTGCAATACTTGGGAATTATCAACAGCAGGGATTTGAAGTTGAGTATGATCTTGAAAAGAAGCGCGTGGGTTTTGCTAGGAGAAAGTGCGCGTCGCTTTGGGATCGGCTGAATCgcgacaaaaattga 1458 0.4465 MASPLFFFLLITLSIPHPSSQIILLPLTHSLSKTQFNTTHHLLKSTTTRSTSRFHHHYKHHHQHQLSLPLSPGTDYTLSFNFGPYSQPITLYMDTGSDLVWFPCTPFNCILCEFKPNPSPLSSSPPTNISHSTPISCNSKACSTAHNSISSSDLCTMAHCPLDSIETKDCGSFHCPPFYYAYGDGSLIASLYRDTLSLSSIKFRNFTFGCAHTTFSEPTGVAGFGRGLLSFPAQLASHSPQLGNRFSYCLVSHSFRHERVRKPSPLILGRYEDEKQSNGNEVVEFVYTSMLENPKHSYFYCVGLKGIIVGKKKIPAPEILRKVNKRGDGGVVVDSGTTFTMLPARFYDSVVAEFDRRVGRLNRRAGEVEMKTGLSPCYYLDTAAVEVPAVTLRFVGRNSSVVLPRKNYFYEFLDGGDGLRRKERVGCLMLMNGGDEFEVSGGPGAILGNYQQQGFEVEYDLEKKRVGFARRKCASLWDRLNRDKN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02379 485 Pfam Xylanase inhibitor N-terminal 76 257 IPR032861 -
Tsu04g02379 485 Gene3D Acid Proteases 275 477 IPR021109 -
Tsu04g02379 485 SUPERFAMILY Acid proteases 71 478 IPR021109 -
Tsu04g02379 485 Pfam Xylanase inhibitor C-terminal 300 469 IPR032799 -
Tsu04g02379 485 PANTHER BNAA01G17170D PROTEIN 1 478 - -
Tsu04g02379 485 PANTHER OS07G0603500 PROTEIN-RELATED 1 478 - -
Tsu04g02379 485 Coils Coil 481 485 - -
Tsu04g02379 485 Gene3D Acid Proteases 61 269 IPR021109 -
Tsu04g02379 485 ProSiteProfiles Peptidase family A1 domain profile. 76 469 IPR033121 -
Tsu04g02379 485 CDD pepsin_A_like_plant 76 473 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02379 Tsu-Chr4 26618270 26619804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02379 - - gmx:100805699 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02379 04 26618270 26619804 Tsu04g02379 04 26618270 26619804 ECH
Tsu05g00377 05 2817440 2819211 Tsu04g02379 04 26618270 26619804 PCT