Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00304 ATGTGCCagttatcatcatcatcaacctctGTCTCCACTTTCTGTGAAACTAATAACAACCAAACAAATGGTATATCcacaaccaaaatcaaaacacagaaAATCAAACCTGACATGTTATCACCATTGATCCCTAAATCCCCAACAACATTCAAACAACAAGACCAACCAAAAAAATCCCATTTTTCTCTTGCTCTAAATGAAGCCAAATACATTGCAAACATAGCATTACCTATGGTGTTAACAGGTCTATTACTTTACTCTCGTTCCATTATTTCTATGTTGTTTCTCGGTCGTGTTGGTGAACTCGCTTTAGCAGGCGGTTCACTTGCGATCGGATTCGCAAATATTACCGGTTACTCCATTCTTTCTGGTCTTGCTATGGGAATGGAACCTATTTGTGGTCAAGCTTTTGGTGCTAAAAGATTCAAACTTCTTGGTCTTACAATGCAAAGAACAATGATTCTTCTTTTATTAACttcaattttcatttcattcttGTGGCTTAACATGAAGAGAATATTGCTTTTTTGTGGTCAACAAGAAGATATAGCAAATGTTGCACAATCTTACATTCTTTATTCTCTTCCTGATCTCGTAGCACAATCGTTGCTACACCCTTTAAGAATCTATCTTCGAAGTCAATCTATAACACTTCCTTTAACATATAGTGCTACTCTTTCTATTCTTCTTCATGTTCCTatcaattattttcttgttgATTTTCTTCAATTAGGAATCAAAGGAATTGCTTTAGGTTCCGTTTGGACGAATTTCAACCTCGTTGTTTCGTTGATTATTTACATTTGGGTTTCTGGTACACATAAGAAAACATGGAATGGTTTTTCATCTGCTTGTTTTAAAGGATGGAAATCGCTTTTGAATTTGGCGATTCCAAGCTGCATTTCGGTTTGTCTCGAATGGTGGTGGTACGAAATCATGATTTTGATTTGTGGTTTATTGATTAATCCACAAGCAACGGTTGCATCAATGGGTGTTTTGATTCAAACAACTGCATTGATATacatttttccttcttctttgaGTTTTGGTGTTTCAACAAGAGTTGGAAATGAACTTGGTGCTGAAAATCCACAAAAAGCCAAACTTGCAGCAATAGTTGGACTCTGTTTCAGTTTTGTTTTAGGTTTCTCTGCTTTGTTCTTTGCGATTTCCGTTCGAAACATTTGGGCTTCAATGTTCACAAATGATCCACAAATCATTGCTTTAACTTCAATGGTGCTACCTATCATAGGACTATGTGAGCTTGGAAATTGTCCACAAACAACGGTTTGTGGTGTCTTAAGGGGAACCGCGAGACCTAAATTAGGCGCAAATATAAATTTAGGTTGTTTTTATCTCGTGGGAATGCCGGTTGCAGTTTGGTTGAGTTTCTTTGCTGGATTTGATTTCAAAGGTTTATGGTTTGGTCTTTTGGCTGCTCAAGGTTCATGTATGGTGACAATGTTGTTTGTTTTGCTTCGTACAAATTGGGAAAATCAAGTACAAAGAGCTAAGGAGTTAACATCATCAGATCCAAgtgaagaagaacaagaagaagagaatGTGTTTGTGAGTTCATCATGTGATACAAAAGAGTGTTCTGATTCATTAGTTTGA 1620 0.3407 MCQLSSSSTSVSTFCETNNNQTNGISTTKIKTQKIKPDMLSPLIPKSPTTFKQQDQPKKSHFSLALNEAKYIANIALPMVLTGLLLYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAKRFKLLGLTMQRTMILLLLTSIFISFLWLNMKRILLFCGQQEDIANVAQSYILYSLPDLVAQSLLHPLRIYLRSQSITLPLTYSATLSILLHVPINYFLVDFLQLGIKGIALGSVWTNFNLVVSLIIYIWVSGTHKKTWNGFSSACFKGWKSLLNLAIPSCISVCLEWWWYEIMILICGLLINPQATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAENPQKAKLAAIVGLCFSFVLGFSALFFAISVRNIWASMFTNDPQIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFFAGFDFKGLWFGLLAAQGSCMVTMLFVLLRTNWENQVQRAKELTSSDPSEEEQEEENVFVSSSCDTKECSDSLV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00304 539 PANTHER MULTIDRUG RESISTANCE PROTEIN 47 519 - -
Tsu05g00304 539 MobiDBLite consensus disorder prediction 524 539 - -
Tsu05g00304 539 MobiDBLite consensus disorder prediction 508 539 - -
Tsu05g00304 539 TIGRFAM matE: MATE efflux family protein 78 475 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu05g00304 539 CDD MATE_eukaryotic 68 504 IPR045069 GO:0042910|GO:1990961
Tsu05g00304 539 Pfam MatE 78 238 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu05g00304 539 Pfam MatE 299 462 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu05g00304 539 PANTHER PROTEIN DETOXIFICATION 47 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00304 Tsu-Chr5 2278202 2280155 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00304 K03327 - gmx:100811560 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00304 05 2278202 2280155 Tsu05g00304 05 2278202 2280155 ECH
Tsu01g04472 01 52391551 52392897 Tsu05g00304 05 2278202 2280155 ECH