Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04472 ATGATCTCCATGCTCTTTCTTGGTCACCTCGGCGAACTTGCCTTAGCCGGCGGTTCACTCGCGGTCGGTTTCGCTAACATTACTGGTTACTCGATCCTCTCCGGTCTAGCCGTAGGGATGGAACCTATTTGTGGACAAGCCTTTGGTGCCAAAAGATTCACTCTCCTTGGTTTATGCTTACAAAAAACCATTCTCTTACTACTCTTAACTTCTATCCCTATTTCAATACTTTGGCTTTACACAAAACATATCCTTCTTTTATGTGGCCAAGAAGAAGCCATAGCTACACAAGCTCAAATCTATCTTCTCTATTCCATTCCTGATCTCTTAGCACAATCATTTTTACACCCTTTAAGAATTTACCTTAGAAGCCAATCCATTACTCTGCCTCTAACTCTTTGTGCTACTTTAGCAATTTTTCTTCACATTCCCATAAACTATTTTCTTGTTTCTCATCTCAACATGGGAATCAAAGGTGTTGCTTTAAGTGGGGTGTGGACAAATTTCAACCTTGTTGCTTCTTTGATTCTTTACATAGTTTTCTCTGGCACACACAAGAAAACATGGGGTGGTTTTTCATCACAATGTTTCAAACAATGGAAATCACTTCTCAATTTAGCTATACCAAGTTGTCTTTCTGTTTGTCTCGAATGGTGGTGGTATGAAATCATGATTTTGTTATGTGGTTTGTTGATAAATCCAAGAGCAACCGTTGCTTCTATGGGAATTTTGATTCAAACTACTTCTTTACTCTATATTTTTCCATCATCAATAAGTTTTAGTGTTTCAACTAGAGTTGGTAACAAATTAGGAGCTCAAAAGCCATCAAAAGCAAAACTTTCTGCCATTGTAGGACTCTCTTGTAGCTTCATTTTGGGTGTATTTGCTTTGGTTTTTGCCATTATGGTTAGAAACATTTGGGCTAGCATGTTCACTGaagataaagaaataataaaaattacatcTTTGGTGTTACCTTTAATAGGGCTATGTGAGCTTGGAAATTGTCCTCAAACAACAGGTTGTGGGGTGCTAAGAGGAACAGCAAGGCCTAAAgtgggtgcaaatatcaattttggTAGTTTTTATATTGTTGGAATGCCTGTGGCAATTTGGTTAGCATTTTTTGTTGGGTTTGATTTTCAAGGATTGTGGCTTGGATTGCTTGTGGCACAAGGTACTTGTGCTGTGACTATGTTGGTGGTTTTGAGTCAAACGGATTGGGATGGTGAAGCATTAAGAGCTAAGAATTTAACAAGaagtgatgttgttgttgttgatgacagcaaagaaattgatgaagagaagTTACTTAAAGCTGAAATTAAGGAAGAAGATTCTTCTTAA 1347 0.3556 MISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKRFTLLGLCLQKTILLLLLTSIPISILWLYTKHILLLCGQEEAIATQAQIYLLYSIPDLLAQSFLHPLRIYLRSQSITLPLTLCATLAIFLHIPINYFLVSHLNMGIKGVALSGVWTNFNLVASLILYIVFSGTHKKTWGGFSSQCFKQWKSLLNLAIPSCLSVCLEWWWYEIMILLCGLLINPRATVASMGILIQTTSLLYIFPSSISFSVSTRVGNKLGAQKPSKAKLSAIVGLSCSFILGVFALVFAIMVRNIWASMFTEDKEIIKITSLVLPLIGLCELGNCPQTTGCGVLRGTARPKVGANINFGSFYIVGMPVAIWLAFFVGFDFQGLWLGLLVAQGTCAVTMLVVLSQTDWDGEALRAKNLTRSDVVVVDDSKEIDEEKLLKAEIKEEDSS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04472 448 PANTHER PROTEIN DETOXIFICATION 1 428 - -
Tsu01g04472 448 CDD MATE_eukaryotic 1 412 IPR045069 GO:0042910|GO:1990961
Tsu01g04472 448 Pfam MatE 209 371 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu01g04472 448 Pfam MatE 1 148 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu01g04472 448 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 428 - -
Tsu01g04472 448 TIGRFAM matE: MATE efflux family protein 1 385 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04472 Tsu-Chr1 52391551 52392897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04472 K03327 - gmx:100813022 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04472 01 52391551 52392897 Tsu05g00304 05 2278202 2280155 ECH
Tsu01g04472 01 52391551 52392897 Tsu01g04472 01 52391551 52392897 ECH