Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00255 ATGGAGCAACCCCAGTTATTGTCTAAGATAGCCACAGGCAATGGACATGGTGAAAATTCTCCATACTTTGATGGATGGAAGGCTTATGAAAATGATCCTTTTCATCCCACAAATAATCCTAATGGGGCTGTGGCTAAATTCATGGAAAGAACAAGAGGGAATAGAGTTTGTTTTGATCCTGACAGAATTGTTATGAGTGGTGGAGCAACTGGAGCACATGAGGTTACAACCTTTTGTTTGGCAGATCCTGGTGATGCATTTTTGGTGCCTACCCCTTATTATGCAGGTTTTGACAGAGATTTGAAATGGAGAACAGGAGTTGAACTTGTTCCAGTCATTTGTAAAAGCTCCAACAATTTCAAGCTAACAAGAAAAGCCTTAGAAGCAGCATTTGAAAAAGCCAAAGaacaaaacatcaaaataaaagGTTTACTTATTACAAATCCATCAAATCCCTTAGGAACAATCATGGACAAAGAAACACTAACAACAATAGTAACTTTCATCAATGAAAAACATATTCACCTAATAAGTGATGAAATATATTCTGCAACAGTTTTTTGCCACCCAAGTTTCACAAGCATAGCTGAGATAATAGAAGACACAAACATCGAATGTAACTGTAACCTTATTCACATTGTTTATAGTCTTTCAAAAGATATGGGATTTCCTGGCTTTAGAGTTGGTATAATATATTCATACAATGATGAAGTTGTTAACTGTGCTCGCAAAATGTCAAGTTTTGGATTAGTCTCTTCGCAGACGCAATACCTTATTGCGTCGATGCTTTCTGATGATGAATTTGTGGATAAGTTTGTTGTAGAAAGTGCAAAGAGACTTGCAAAAAGATATGGAATTTTCTGTAGAGGTTTAGCACAAGTTGGTATAAAGTGTTTGCAAAGTAATGCAGGTCTTTTTCTATGGATGGATTTGAGGTGTCTTTTGAAGAAACCAACATTTGATGAAGAAATGAAATTATGGAAAGTGATTATTCATCAAGTTAAGATTAATATATCACCTGGTGTTTCTTTTCATTGTAGTGAACCAGGGTGGTTTAGAGTGTGCTATGCAAATATGGATGATAATGATGTTGAAGTTTCTTTGACAAGAATTCGCGCTTTTGTGAGGCGAAATAAGGCCGAAATGGTGGCTGCGAAGAATCGTTGTAGTCGAAGAAACTTGAGGATAAGTTTCTCATTTAGAAGATTGGATGATTTTTTGATATCGCCTCATTCTTCTATTACTCATTCACCTATTGTTAAAGCCACCACTTGCTGA 1278 0.3584 MEQPQLLSKIATGNGHGENSPYFDGWKAYENDPFHPTNNPNGAVAKFMERTRGNRVCFDPDRIVMSGGATGAHEVTTFCLADPGDAFLVPTPYYAGFDRDLKWRTGVELVPVICKSSNNFKLTRKALEAAFEKAKEQNIKIKGLLITNPSNPLGTIMDKETLTTIVTFINEKHIHLISDEIYSATVFCHPSFTSIAEIIEDTNIECNCNLIHIVYSLSKDMGFPGFRVGIIYSYNDEVVNCARKMSSFGLVSSQTQYLIASMLSDDEFVDKFVVESAKRLAKRYGIFCRGLAQVGIKCLQSNAGLFLWMDLRCLLKKPTFDEEMKLWKVIIHQVKINISPGVSFHCSEPGWFRVCYANMDDNDVEVSLTRIRAFVRRNKAEMVAAKNRCSRRNLRISFSFRRLDDFLISPHSSITHSPIVKATTC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00255 425 Pfam Aminotransferase class I and II 43 371 IPR004839 GO:0009058|GO:0030170
Tsu05g00255 425 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 216 229 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tsu05g00255 425 Gene3D Aspartate Aminotransferase, domain 1 266 370 IPR015422 GO:0003824
Tsu05g00255 425 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 3 43 - -
Tsu05g00255 425 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 43 387 - -
Tsu05g00255 425 SUPERFAMILY PLP-dependent transferases 42 377 IPR015424 -
Tsu05g00255 425 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 43 - -
Tsu05g00255 425 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 43 387 - -
Tsu05g00255 425 Gene3D - 31 265 IPR015421 GO:0003824
Tsu05g00255 425 CDD AAT_like 43 373 - -
Tsu05g00255 425 Coils Coil 117 137 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 242 265 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 174 197 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 210 234 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 162 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 105 - -
Tsu05g00255 425 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00255 Tsu-Chr5 1893419 1896156 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00255 K20772 - gmx:100793020 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00255 05 1893419 1896156 Tsu02g00420 02 3542664 3545372 PCT