Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00420 ATGGACAGAACCACATTAAAAACCGTTGTAAATTTCATCAACGAAAAGCGTATTCATCTTATAAGCGATGAAATTTACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATAGCTGAGATCATAGAACATGAAACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCGAAAGACATGGGATTCCCCGGTTTTAGAGTCGGTATAATTTACTCTTACAATGATAACGTTGTTAATTGCGCGCGCAAAATGTCAAGTTTTGGATTAGTTTCAACACAGACACAATATTTGATGGCAAAAATGTTATCtgatgatgaatttgttgaGAGGTTTCTTGCTGAGAGTGCAAAGAGATTAGCACAAAGGTATAGAGTTTTCACCGGCGGATTAATCAAAGTTGGAATTAAGTGTTTACAAAGTAATGGTGGACTTTTTGTTTGGATGGATTTAAGAGGACTTTTGAAGGAAGCTACATTTGAATCAGAATTGGAATTATGGAGAGTGATTATTCATGATGTTAAGATTAATGTTTCACCTGGTGTTTCTTTTCATTGTTCTGAACCAGGTTGGTTTAGAGTGTGTTATGCTAATATGGATGATAGAGATGTTCAAATTGCATTAAACAGGATTAGATCATTTGTTATGAAGAATAATAAGGAGGTTATGGTTTCTGAGAAGAACACTAAACATTGCTGGCAGACTAATTTGAGGTTAAGCCTTAAAACAAGAAGGTTTGATGATATTATGATGTCACCTCATTCTCCAATGGCTCACTCACCTCTTGTTAAAGCCAGCACTTGA 819 0.3529 MDRTTLKTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEIIEHETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDNVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVERFLAESAKRLAQRYRVFTGGLIKVGIKCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHDVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALNRIRSFVMKNNKEVMVSEKNTKHCWQTNLRLSLKTRRFDDIMMSPHSPMAHSPLVKAST 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00420 272 Gene3D Aspartate Aminotransferase, domain 1 73 226 IPR015422 GO:0003824
Tsu02g00420 272 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 232 - -
Tsu02g00420 272 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 1 232 - -
Tsu02g00420 272 Pfam Aminotransferase class I and II 2 216 IPR004839 GO:0009058|GO:0030170
Tsu02g00420 272 CDD AAT_like 1 217 - -
Tsu02g00420 272 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 18 41 - -
Tsu02g00420 272 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 87 110 - -
Tsu02g00420 272 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 55 79 - -
Tsu02g00420 272 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 61 74 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tsu02g00420 272 SUPERFAMILY PLP-dependent transferases 1 220 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00420 Tsu-Chr2 3542664 3545372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00420 K20772 - gmx:100037458 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00420 02 3542664 3545372 Tsu02g00420 02 3542664 3545372 ECH
Tsu05g00255 05 1893419 1896156 Tsu02g00420 02 3542664 3545372 PCT