Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00214 ATGGCTTCGCGCGTCACTTCTCCTTCTTATTTAAACTCTTCACGTTTTCTATCACCTTCTAAATTTTCCAATTCTTCATTCCAAATCCAAAACGGTGTTGCTTCTTCCACCATGCCCAACAAAACCGTTCTTGTTACCGGTGGTGCCGGTTACATCGGTACTCACACCGTTCTTCAGCTTTTACTCGGTGGTTTTAAAgctgttgttgttgataatcTTGATAATTCGTCGGAAGTTGCTATTCATAGAGTTAAAGAACTCGCCGCTGAATTCGGGAATAACCTTAATTTTCATAAGGTTGACCTCCGAGACAGAGATGCACTAGAGCAAATTTTTGCTTCCACAAAATTTGATGCAGTCATACATTTTGCTGGAATGAAAGCAGTAGGTGAAAGTGTGCAGAAACCGTTACTCTActataataacaacttgattgggACAATCACTCTATTAGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTTCCTCTGTCAGCTGCAAACCCATATGGACGAACCAAGCTTACTATTGAAGAAATTTGCCGTGATGTCCAACGTGCTGATCCAGATTGGAAAATTATGTTATTGAGATATTTCAATCCTGTGGGTGCACACCCTAGTGGTTATATCGGGGAGGATCCTCGCGGAATTCCTAATAATCTCATGCCATTTATTCAGCAAGTAGCGGTTGGCAGACGACCTGCACTGACAGTTTTTGGAACCGATTATAATACCGTTGATGGCACTGGGGTTCGGGATTATATTCATGTTGTGGATTTAGCAGATGGCCACATTGCTGCACTGCTTAAACTAGAAGAAGCTGATATAGGTTGTGAGGTTTATAACTTGGGGACAGGAAAGGGAACATCAGTTTTGGAGATGGTCAGAGCTTTTGAACAGGCATCTGGAAAGCAAATTCCACTTGTGAAGGCTGGCCGTAGACCTGGCGATGCTGAAATTGTTTATGCATCGACAAAAAAAGCTGAAAGAGAACTCAAGTGGAAGGCAAAATATGGAATCGATGAAATGTGCCGTGATCAATGGAACTGGGCCAGCAAAAATCCTTATGGCTATGGATCTCCAGATTCCTCGGATTAG 1161 0.4143 MASRVTSPSYLNSSRFLSPSKFSNSSFQIQNGVASSTMPNKTVLVTGGAGYIGTHTVLQLLLGGFKAVVVDNLDNSSEVAIHRVKELAAEFGNNLNFHKVDLRDRDALEQIFASTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVQRADPDWKIMLLRYFNPVGAHPSGYIGEDPRGIPNNLMPFIQQVAVGRRPALTVFGTDYNTVDGTGVRDYIHVVDLADGHIAALLKLEEADIGCEVYNLGTGKGTSVLEMVRAFEQASGKQIPLVKAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDSSD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00214 386 Gene3D - 43 312 - -
Tsu05g00214 386 Gene3D - 231 372 - -
Tsu05g00214 386 TIGRFAM galE: UDP-glucose 4-epimerase GalE 43 377 IPR005886 GO:0003978|GO:0006012
Tsu05g00214 386 PANTHER UDP-GLUCOSE 4-EPIMERASE 38 383 - -
Tsu05g00214 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 378 IPR036291 -
Tsu05g00214 386 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 38 383 - -
Tsu05g00214 386 CDD UDP_G4E_1_SDR_e 42 371 IPR005886 GO:0003978|GO:0006012
Tsu05g00214 386 Pfam GDP-mannose 4,6 dehydratase 44 367 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00214 Tsu-Chr5 1564770 1569575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00214 42 356 Miscellaneous Gene Families AT4G00110 27.246 1.33e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00214 K01784 - gmx:100818509 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00214 05 1564770 1569575 Tsu05g00214 05 1564770 1569575 ECH
Tsu05g00214 05 1564770 1569575 Tsu02g00365 02 3060629 3064242 PCT