Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04592 ATGGGTGTTTCTATGAGAGATTTGGATCCAGCTCTCAAGGGAGCTGGACAAAAGGATGGACTTGAAATATGGCGTATTGAGAGTTTTAATCCAGTTCCCATCCCTCAGTCTTCTCATGGAAAGTTTTTTACCGGAGACTCGTATATAATCTTGAAGACAACCGCATCAAAAAGTGGTGCTCTGCGCCACGATATTCATTATTGGCTTGGTAAAGATACCAGTCAAGACGAAGCTGGTGTCGCAGCCATCAAAACAGTTGAGTTGGATGCAGTTCTAGGAGGACGAGCTGTTCAGTATCGTGAAGTGCAGGGTCATGAAACAGAGAAGTTCTTGTCATATTTCAAACCATGTATCATACCACAAGAAGGTGGCGCTGCCTCTGGTTTTAAGCATGTTGAAGCTGAAGAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTTGTGAACGTTTCTTTTGCTCGATCTTCACTTAACcatgatgatatttttattctgGATACCGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTTCAATATATTAAAGATACCTACCATGATGGCAAATGTGAAGTGGCTTCTATTGAGGATGGAAGGATGATGGCTGACAAAGAAGCTGGAGAATTTTGGGCTTTGTTTGGTGGTTTTGCTCCTCTTCCAAGAAAAACAGTCAGTGATGATGATATGAAAATTGATTCTCATCCTCCAAAGTTGCTTAGTGTTGAAAAGGGGAAGGCAGAGCCTATTGAAACTGACTCTTTGACAAAGGAATTGCTGGACACCAACAAATGCTATATTATAGATTGTGGGTTGGAGGTGTTTGTTTGGATGGGAAGAAATACATCTCTCGATGATAGGAAAAGCGAACTAGTCAGTAGCACCAATCGACCAAAATCCCAGATAATCCGCGTTATTGAAGGATTTGAAACAGTGATGTTCAGGTCCAAATTTGATTCTTGGCCTCAAACTGCTAATGTAACAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTTAAACGTCAAGGATTGGATGTTAAGGGACTCTTGAAAGCTGATCcagtaaaagaagaagaacctCAACCTTATATCGATTGCACAGGACATTTACAGGTTTGGCGTGTGAATGGTCAAGAAAAAAATCTTCTTGCAGCCACTGACCAGTCAAAATTTTATAGCGGAGATTGCTTCATCTTTCAGTATTCATACCCTGGAGAAGATAGGGAGGAGCATCTTATAGGAACATGGATTGGAAATAACAGTGTTGAGGAAGAAAGAGCTTCAGCGCTTTTACTAGCAAGCAAAATGGTTGAGTTAATGAAGTTTATTCCATCcatgGCTCGTATTTATGAAGGCATTGAAACAATTCAATTTTATTCCATCCTTCAAAGCTTGATTGTTTATAAGGGAGGGCTTGGTGATGCATACAAGAATTACATTGCGGAGAAGGAAATTCCAGACGATACGTACAAGGAGGATGGTGTTGCATTATTCCGCATCCAAGGCTCTGGACCAGACAATATGCAAGCTATACAAGTTGACCCAGTTGCTTCCTCCATGAATTCCTCTTATTGCTACATACTTCATAATGACTCCATGGCTTTTACTTGGTCTGGAAATCTTACAACTTCAGATGACCAAGAACTCGCCGAGAGAATGCTGGATTTAATTAAGCCGGATTTACCATGCAGACCACATAAGGAAGGTGCGGAATCTGAACAGTTTTGGGAATTGTTAGGAGGAAAAACAGAATATTCCAGTCAAAAGATTGTGCGGGAAGCTGAAAATGATCCCCACCTATTTTCTTGCCATTACTCAGAAGGAAAATTAAAGGTGAAAGAGATACACAATTTTTCCCAGGATGATTTGATGACAGAAGATATTTTCGTCTTGGATTGTCACTCTGAAATCTTTGTGTGGGTTGGCCAGCAGGTTGACCTCAAAAAAAGAATGCTAGCTCTACCAATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAAAAACAATTTCTCCTCTTACTCCAATGTATATTGTCATGGAAGGCAATGAGCCGCCTTTCTTCACTCGCTTCTTTAAATGGGATTCTGCAAAACCTGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTGCAATCCTGAAAAATGGGGGTACTCCACCTTTGGTTAAACCCAAAAGAAGAGCACCTGTATCTTATGGGGGAAGGTCTGGTGGTTTACCAGAGAAATCCCAGCGCTCGCGCAGTATGTCTGTTAGTCCCGACCGTGTTCGTGTGAGGGGAAGATCTCCGGCCTTCAATGCATTGGCAGCTACTTTCGAGAACACAAATGTTAGAAACCTTTCGACTCCACCTCCAATGATTAGAAAACTGTACCCAAAATCTGTGACATCAGATTCAGCATCAGTGGCATCTAAATCATCATCGTCCATATCTCGCCTTACTTCTACTTTTGACCGACCATTAGCACGAGACAATTTGATTCCTCGGTCATTTAGAGGAAGCACAGATACCTTCAAATCAATCCGCGAGGCAAATAGTGATAACGAGAATTCTACGAGTAGTAGAGGAGAATCTGCGAAAGAGGGTGGAGCTGAAGATAATGAAGATCTTCCAGTTTACCCATATGAACGTGTTAACACAGCTTCTGAAGATCCTATGCCAGACATCGACGTGACTAAACGAGAGGCTTATCTGTCACCCGAAGAGTTCAATGAGAAACTGGGGATGACTAGGAGTGAATTTTACAAGTTGCCAAAATGGAAACAGAATAAAGTCAAAATGGCTGTTCAATTGTTCTGA 2847 0.4078 MGVSMRDLDPALKGAGQKDGLEIWRIESFNPVPIPQSSHGKFFTGDSYIILKTTASKSGALRHDIHYWLGKDTSQDEAGVAAIKTVELDAVLGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVNVSFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVVQYIKDTYHDGKCEVASIEDGRMMADKEAGEFWALFGGFAPLPRKTVSDDDMKIDSHPPKLLSVEKGKAEPIETDSLTKELLDTNKCYIIDCGLEVFVWMGRNTSLDDRKSELVSSTNRPKSQIIRVIEGFETVMFRSKFDSWPQTANVTMSEDGRGKVAALLKRQGLDVKGLLKADPVKEEEPQPYIDCTGHLQVWRVNGQEKNLLAATDQSKFYSGDCFIFQYSYPGEDREEHLIGTWIGNNSVEEERASALLLASKMVELMKFIPSMARIYEGIETIQFYSILQSLIVYKGGLGDAYKNYIAEKEIPDDTYKEDGVALFRIQGSGPDNMQAIQVDPVASSMNSSYCYILHNDSMAFTWSGNLTTSDDQELAERMLDLIKPDLPCRPHKEGAESEQFWELLGGKTEYSSQKIVREAENDPHLFSCHYSEGKLKVKEIHNFSQDDLMTEDIFVLDCHSEIFVWVGQQVDLKKRMLALPIGEKFLEHDFLLKTISPLTPMYIVMEGNEPPFFTRFFKWDSAKPAMLGNSFQRKLAILKNGGTPPLVKPKRRAPVSYGGRSGGLPEKSQRSRSMSVSPDRVRVRGRSPAFNALAATFENTNVRNLSTPPPMIRKLYPKSVTSDSASVASKSSSSISRLTSTFDRPLARDNLIPRSFRGSTDTFKSIREANSDNENSTSSRGESAKEGGAEDNEDLPVYPYERVNTASEDPMPDIDVTKREAYLSPEEFNEKLGMTRSEFYKLPKWKQNKVKMAVQLF 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04592 948 PRINTS Gelsolin family signature 524 544 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 584 603 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 636 658 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 403 419 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 461 481 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 314 335 IPR007122 GO:0051015
Tsu04g04592 948 PRINTS Gelsolin family signature 428 446 IPR007122 GO:0051015
Tsu04g04592 948 SUPERFAMILY VHP, Villin headpiece domain 881 948 IPR036886 GO:0003779|GO:0007010
Tsu04g04592 948 SUPERFAMILY Actin depolymerizing proteins 129 236 - -
Tsu04g04592 948 ProSiteProfiles Headpiece (HP) domain profile. 883 948 IPR003128 GO:0003779|GO:0007010
Tsu04g04592 948 Gene3D Severin 606 724 IPR029006 -
Tsu04g04592 948 CDD gelsolin_S5_like 509 600 - -
Tsu04g04592 948 Gene3D Severin 509 605 IPR029006 -
Tsu04g04592 948 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 253 419 IPR036180 -
Tsu04g04592 948 Pfam Villin headpiece domain 913 948 IPR003128 GO:0003779|GO:0007010
Tsu04g04592 948 SUPERFAMILY Actin depolymerizing proteins 10 147 - -
Tsu04g04592 948 SUPERFAMILY Actin depolymerizing proteins 503 604 - -
Tsu04g04592 948 MobiDBLite consensus disorder prediction 846 874 - -
Tsu04g04592 948 MobiDBLite consensus disorder prediction 733 773 - -
Tsu04g04592 948 SUPERFAMILY Actin depolymerizing proteins 587 709 - -
Tsu04g04592 948 SMART VHP_1 913 948 IPR003128 GO:0003779|GO:0007010
Tsu04g04592 948 Gene3D Severin 380 492 IPR029006 -
Tsu04g04592 948 Gene3D Severin 133 243 IPR029006 -
Tsu04g04592 948 PANTHER VILLIN 1 948 IPR007122 GO:0051015
Tsu04g04592 948 MobiDBLite consensus disorder prediction 799 830 - -
Tsu04g04592 948 Gene3D Severin 244 348 IPR029006 -
Tsu04g04592 948 MobiDBLite consensus disorder prediction 810 830 - -
Tsu04g04592 948 Gene3D Villin headpiece domain 886 948 IPR036886 GO:0003779|GO:0007010
Tsu04g04592 948 Pfam Gelsolin repeat 149 212 IPR007123 -
Tsu04g04592 948 Pfam Gelsolin repeat 629 704 IPR007123 -
Tsu04g04592 948 Pfam Gelsolin repeat 266 302 IPR007123 -
Tsu04g04592 948 Pfam Gelsolin repeat 29 111 IPR007123 -
Tsu04g04592 948 SUPERFAMILY Actin depolymerizing proteins 374 520 - -
Tsu04g04592 948 MobiDBLite consensus disorder prediction 844 888 - -
Tsu04g04592 948 CDD gelsolin_S4_like 378 477 - -
Tsu04g04592 948 CDD gelsolin_S1_like 12 124 - -
Tsu04g04592 948 Gene3D Severin 7 132 IPR029006 -
Tsu04g04592 948 CDD gelsolin_S3_like 254 334 - -
Tsu04g04592 948 SMART VILL_6 251 335 IPR007122 GO:0051015
Tsu04g04592 948 SMART VILL_6 19 117 IPR007122 GO:0051015
Tsu04g04592 948 SMART VILL_6 384 481 IPR007122 GO:0051015
Tsu04g04592 948 SMART VILL_6 511 598 IPR007122 GO:0051015
Tsu04g04592 948 SMART VILL_6 137 231 IPR007122 GO:0051015
Tsu04g04592 948 SMART VILL_6 615 711 IPR007122 GO:0051015
Tsu04g04592 948 PANTHER VILLIN-4 1 948 - -
Tsu04g04592 948 CDD gelsolin_S6_like 613 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04592 Tsu-Chr4 53481311 53488547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04592 - - gmx:100807762 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04592 04 53481311 53488547 Tsu04g04592 04 53481311 53488547 ECH
Tsu07g02349 07 26796614 26811137 Tsu04g04592 04 53481311 53488547 PCT