Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04587 ATGGGATGTTCTCAATCAAAGttagatgatgaagaagcagtTAAGATTTGTAAAGATAGAAAAAGATTCATAAAAGAAGCTGTTGAGCATAGAATTCAATTTGCAAATGGACATATAGCTTATATTCAGTCTCTTAAAAGGGTATCTGCTGCTTTGCTTGATTATTTTGAAGGAGATCAGGCACTTCAATTTTCATTGGATTCATTCATTCCGATATCGAAAGATTCGGGAGCTCCAACAACAATTGAGATTGGGCCTAATACTACAACTTTGAAAGTGAATTACTTAAGGCCAAGTGGTAATCCACCGATTTTGGTCGAGGAAAAGCCTCCATCGCCGGAAACGGTTCGAGTTGAGTCGTATTCTCCTATACACCGATATGGTGTTGATGGTTTTTTTGGTATGCAGTCCTCGCCTATGAATGCGTCGATTTTTGCTTATTCTCCAAATAACAGGCCTGTTATCCCTCCACCTTCGCCTCAATGGGATTCCTTTTGGAATCCATTTACATCGTTGGACTATTATGGTTATCCTAATGGAAGTAGCCTTGACCAGATTCTTATGGATGATGAAAACCGAGAACTGAGGCATGTCCGAGAAGAAGAAGGAATACCAGACCTGGAACAGGAAGAAGAAGGTTTTGTTGCGAAGAAAAATGTAGCagaagaaaaaaccaaaattgatGCAAACACTTCCAAAGAAGAAGTCGCGGTTGAAGATGTTGATGAACATGAGGAGGTAAAGAAGGAAGAGAAAGAGGAGCGAACAGATGCTGAAACCAAAACTGCAAATGAAATATCAGACTCGCAGGTCGATGGCAGTGAGTGTTTTCAAGTATCAAAAGCTCAAACTTCAGGTCATATGGAATCCAGTCATCAAGAAATGGCAATTGATAATCAAGAAGCTAAGGAAGAAACACCTGGTTTTACTGTTTATGTAAACCAAAGACCGACAAATATGGCAGAAGTGATAAAGGACCTTGAAGCTCAATTCACAATTGTTTGCAGTGCAGCCAATGACGTCTCGGCATTGTTAGAGGCCAAGAAAGCTCAATATTCATCCACCTCTAATGAACTTTCAGCATCAAAATTATTGAATCCAGTAGCTCTTTTTCGCTCAGCTTCTTCTCGCTCGTCCCCGtcaaaaattataacaaatttttcAAACACTAGGGATGAAGTTTATGATGATCCATCAGAGGAAAATTGTGTGTTTTCGGTTAGTCACCAGTCAACATTAGACAGGTTATATGCATGGGAGAAGAAGCTCTATCAGGAAGTCAAGTCTGGAACACGTGTTCGACTTGCGTATGAGAAGAAATGTCTGCAACTGAAGAACCATGATATAAAAGGAGAGGAACCCTCTTCTGTGGATAAAACAAGAGCAACAATTAGAGATCTACATACACAGATAACAGTTTCAATACACTCAGTTGAAGCTATTTCCAAGAGAATTGAAACTTTAAGGGATGAAGAGTTGCATCCTCAGCTTCTTGAATTGATGCTAGGGCTAGCGAAGATGTGGAAAGTGATGGCAGAAAGTCATCAGACGCAGAAACAAATCATAGAAGAAGCCAACATTCTTCTAGCCGGCAGCATTGATGCCAGAAAACAGTCTCCTATATCAATAACTGATCCACACAGGCTCGCACATTCAGTCTCCAATCTTGAAACTGAGTTGAGGAACTGGCGAAACACATTTGAATCATGGATCACTTCTCAAAGATCCTACATTCATGCACTAACCGGCTGGCTTCTCCGATGCATGAGATGCGAGCCTGATGCATCAAAGTTAATATGCTCTCCTCGAAGATCTAGCTGCACTCATCCATTGTTTGGACTTTGTGTTCAGTGGTCAAGGCGTGTAGATTCCGTACAAGAAACAGCAGTGCTTGATGGCATAGACTCTTTTGCAGCTGGCTTAGGATCCTTCTATGCACAACAGCTAAGAGAAGATTCAGCACAAAATGCAATAGTTGGAAACAATGGGAATATGGAAATGGTGGAAGTTGGTAAAGTAGGTGAAGAAGTGGTGGAGGGTGCTGTTAAGGTACTTTGTGGTGGAATGTCAAATGCTATGAGCTCAATGGCTGAGTTTGCTATTGATTATGCTAAGGGATACAATGAACTTGTTAAACAATGGGAGAATGTTAACTTGCAGCAAAATTGTGAGGCTGCAAAATGA 2184 0.3988 MGCSQSKLDDEEAVKICKDRKRFIKEAVEHRIQFANGHIAYIQSLKRVSAALLDYFEGDQALQFSLDSFIPISKDSGAPTTIEIGPNTTTLKVNYLRPSGNPPILVEEKPPSPETVRVESYSPIHRYGVDGFFGMQSSPMNASIFAYSPNNRPVIPPPSPQWDSFWNPFTSLDYYGYPNGSSLDQILMDDENRELRHVREEEGIPDLEQEEEGFVAKKNVAEEKTKIDANTSKEEVAVEDVDEHEEVKKEEKEERTDAETKTANEISDSQVDGSECFQVSKAQTSGHMESSHQEMAIDNQEAKEETPGFTVYVNQRPTNMAEVIKDLEAQFTIVCSAANDVSALLEAKKAQYSSTSNELSASKLLNPVALFRSASSRSSPSKIITNFSNTRDEVYDDPSEENCVFSVSHQSTLDRLYAWEKKLYQEVKSGTRVRLAYEKKCLQLKNHDIKGEEPSSVDKTRATIRDLHTQITVSIHSVEAISKRIETLRDEELHPQLLELMLGLAKMWKVMAESHQTQKQIIEEANILLAGSIDARKQSPISITDPHRLAHSVSNLETELRNWRNTFESWITSQRSYIHALTGWLLRCMRCEPDASKLICSPRRSSCTHPLFGLCVQWSRRVDSVQETAVLDGIDSFAAGLGSFYAQQLREDSAQNAIVGNNGNMEMVEVGKVGEEVVEGAVKVLCGGMSNAMSSMAEFAIDYAKGYNELVKQWENVNLQQNCEAAK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04587 727 MobiDBLite consensus disorder prediction 235 272 - -
Tsu04g04587 727 Coils Coil 716 727 - -
Tsu04g04587 727 PANTHER DUF630 FAMILY PROTEIN 1 720 - -
Tsu04g04587 727 MobiDBLite consensus disorder prediction 235 262 - -
Tsu04g04587 727 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Tsu04g04587 727 Pfam Protein of unknown function (DUF632) 320 640 IPR006867 -
Tsu04g04587 727 PANTHER UNCHARACTERIZED 1 720 - -
Tsu04g04587 727 Coils Coil 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04587 Tsu-Chr4 53457947 53461475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04587 1 648 Acyl Lipid Metabolism Gene Families AT2G27090 27.601 7.19e-61 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04587 - - cam:101505055 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04587 04 53457947 53461475 Tsu04g04587 04 53457947 53461475 ECH
Tsu04g04587 04 53457947 53461475 Tsu07g02342 07 26656981 26661590 PCT