Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04575 ATGCCACCGGCTCTATTAGATCCGCCATTGTCAGAAACATCGTTGGTGCCGTCTTTAATTTCCGGCACCATTTCTCAGGAACCGGTGCCGGAGAGTCGATTATTTGAGGATCTTAGAGGTTTACAGTGGCGTATAAATCTTGGGGTTTTGCCACCTTGTTCTTCTTTAACTTCCATTGATGATCTTCGTCGTGCCACCGCTAATTCCCGAAGGAGGTATGCTAGTGTAAGAGGGCAGCTCCTGGTTGATCCCCACATTACAAAGGATGGAAGTAGTTCACCACCCAATCTTGTCATGGACAATCCACTTTCACAAAATCCAAACAGTACATGGGGTCGCTTTTTTCAGAACGCGGAGCTGGAGAGGATGGTGGATCAGGATTTATCACGTTTATACCCAGAACATGGCTTCTATTTCCAGACAAAAGGGTGCCAAGGCATATTAAGACGTGTTTTACTATTATGGTGTCTTAAACACCCCGAGTGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTTTGCTTTTTGTTCTCCAAGTTGATGTAGAGCACCATTCGGAAGTTCGAAAACTTCATGAAGATCACTTCACAGACAGATTTGATGGTCTCTTTTGTCAAGAGAATGATCCTTACAGCTTTGATTTTATAAGATCTCCAGACttgatgaatgatgaagttGACTCCCATGGAGAAGGAGTGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGACCATTGTATTGCTAAGTGATGCTTATGGGGCTGAAGGTGAATTGGGCATTGTTTTATCTGAGAAATTTATCGAGCATGATGCTTACTGTATGTTTGAAGCTTTAATGAATGGGGCTCACGGATCAGTCGCAATGGCCgattttttctcttattctcCTGTTGCCGGGTCCCATACTGGTTTGCCACCTGTAATTGAAGCTTCTGCTGCACTGTATCATTTGTTGTCTCATGTGGATTCATCTTTATATAGCCATTTTGTTGAGCTTGGGGTTGAACCACAGTACTTTTCTCTCCGCTGGTTAAGAGTTTTATTTGGACGGGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAAATCTTTTTATCAGATAATAGTGAAATGGAAAAGCATGTGGAGGACAATGCAGACACTGGTTTTAGGATCTTTCATTCATCTCGTGGACGATTTATCTCAGCTATTGCTGTGGCAATGTTACTTCATATAAGATCTTCACTACTTGCGACTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAGCTTTCCTGAGGACACTGACATTAAAAAACTAATAGAGAAAGCTAAGTCCTTGCAGACTCTTGCATTAAGTTCTGAAATTTCATCCTCAACACCTATGCTTGTAGAGTATAACAAGGGTAAATCAGTTGTTGCAAGATCTATTAGCATTCCATGTGAATCAAGTTCACCAAAAACTCCTAACAGTTTAGTACCTGATAATAGCTACTGGGAAGAAAAGTGGAGAGTTGTTCACAGTGCTGAAGAACTTAAACAAGATGGAGTAGAAAAGCAGGTTCCATCTCAGAAAAAGAGATGGACAGAAAAGGTAAAGTCAAGTTTGAAAAGAACAGAATCTGAACCATCTTCCTCAACGATTAAAAGTGGTAAAAAGGAATCTAAGGCGTATGTTAAGCGCAGTTTGTTAGATGATCTTTCTAAGGAACTTGGGTCAGAAGGAGATACAGAAAAACTCAACTGTCATGAAATCTTATGCCAGCAGGATAATCGTTCAGTAGCAGTTGAAGTGGGGCAACAAGATGATGGTTCCGACGACAGCAACGATTACGATGCTGATGATAGATGTCTAAATAAAAACATCAGCAGTGAGAACTCATTTAACCCAGCTAGTCCTCCTAATGAGATCAAAGatcttgaaaatgaaaatatctcACAGAAAAGTAGTGTTGGGTCTAATTTATCTGTTGATGCAATTAATGAAATTTCACATAGTAGTCCCATTGATTCGCCTCTTCCAATATCTGATCATCCTGAGAATAACCTATCTCCTGCGCCAGGGCGCAATAATGATTCCACAGGAAATGTGGCAACAATTTCTAGGGATATAAAACTGAATAAATTCCAGTGGCTTTGGAAGTTTGGTCGTAATAAGGGCGAGTTAATGTCTGAGAAAAGAGGTCGTTCTTCTGAGCCTGTAAAACCGACCAACAATTTTAACAATAATCAAAGTAACACAGCACCCGCTTCTACAGCCGGTGAGCATTGCAGTTCTGTTAATTTTAAAGGAGATTCTGCAGACCAGAATGTGATGGGAACTTTGAGGAATATTGGGCAGTCCATGCTTGAGCACATTCAGGTGATTGAGTCTGCTTTCCAACACGAGCGTGGTCAGGGAGCTTCATTGGATAATAATATGTCTAAAAATGTTCTGGTCGGCAAAGGGCAGGTTACTGCCATGTCAGCTCTCACGGAGCTCCGCAAAATTAGCAACCTTTTGTCTCAGATGTGA 2511 0.4046 MPPALLDPPLSETSLVPSLISGTISQEPVPESRLFEDLRGLQWRINLGVLPPCSSLTSIDDLRRATANSRRRYASVRGQLLVDPHITKDGSSSPPNLVMDNPLSQNPNSTWGRFFQNAELERMVDQDLSRLYPEHGFYFQTKGCQGILRRVLLLWCLKHPECGYRQGMHELLAPLLFVLQVDVEHHSEVRKLHEDHFTDRFDGLFCQENDPYSFDFIRSPDLMNDEVDSHGEGVKIKSLDELDPKIQTIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFEALMNGAHGSVAMADFFSYSPVAGSHTGLPPVIEASAALYHLLSHVDSSLYSHFVELGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFLSDNSEMEKHVEDNADTGFRIFHSSRGRFISAIAVAMLLHIRSSLLATENPTTCLQRLLSFPEDTDIKKLIEKAKSLQTLALSSEISSSTPMLVEYNKGKSVVARSISIPCESSSPKTPNSLVPDNSYWEEKWRVVHSAEELKQDGVEKQVPSQKKRWTEKVKSSLKRTESEPSSSTIKSGKKESKAYVKRSLLDDLSKELGSEGDTEKLNCHEILCQQDNRSVAVEVGQQDDGSDDSNDYDADDRCLNKNISSENSFNPASPPNEIKDLENENISQKSSVGSNLSVDAINEISHSSPIDSPLPISDHPENNLSPAPGRNNDSTGNVATISRDIKLNKFQWLWKFGRNKGELMSEKRGRSSEPVKPTNNFNNNQSNTAPASTAGEHCSSVNFKGDSADQNVMGTLRNIGQSMLEHIQVIESAFQHERGQGASLDNNMSKNVLVGKGQVTAMSALTELRKISNLLSQM 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04575 836 MobiDBLite consensus disorder prediction 89 103 - -
Tsu04g04575 836 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 108 289 - -
Tsu04g04575 836 ProSiteProfiles TBC/rab GAP domain profile. 33 372 IPR000195 -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 596 637 - -
Tsu04g04575 836 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 447 IPR035969 -
Tsu04g04575 836 Pfam Rab-GTPase-TBC domain 121 180 IPR000195 -
Tsu04g04575 836 Pfam Rab-GTPase-TBC domain 272 373 IPR000195 -
Tsu04g04575 836 Gene3D - 311 455 - -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 722 754 - -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 84 103 - -
Tsu04g04575 836 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 764 - -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 682 696 - -
Tsu04g04575 836 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 332 IPR035969 -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 732 754 - -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 514 554 - -
Tsu04g04575 836 SMART tbc_4 25 418 IPR000195 -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 514 537 - -
Tsu04g04575 836 MobiDBLite consensus disorder prediction 664 696 - -
Tsu04g04575 836 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04575 Tsu-Chr4 53327171 53332068 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04575 K18469 - gmx:100816501 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04575 04 53327171 53332068 Tsu04g04575 04 53327171 53332068 ECH
Tsu04g04575 04 53327171 53332068 Tsu08g02761 08 42375674 42380068 PCT