Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04574 ATGGGAACGTTCCAGACATGGAGAAAGGCCTACGGAGCGCTTAAAGATTCCACCAAGGTTGGCCTAGCCAAGGTCCATAGCGATTACAAGGAATTGGACATTGCAATTGTTAAAGCTACAAGTCACGTAGAATATCCCCCCAAAGAACGTCATGTTCGAAAAATATTCTATGCCACATCCGCACACCAACCCCGGGCAGATGTAGCATATTGTATCCACACACTTTCGAAGAGACTTTCCAAGACGAGGAATTGGATAGTTGCCATAAAGACATTGATAGTGATTCATAGGATATTGAGAGAGGGTGATCCTAGCTTCAAAGAAGATCTTGTAACCTACTCGCGCAGGGTCCGTTTTCTGCAAATTATCCATTTCAAAGATGACTCAAGCCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAAACTATGCACAATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATTCTTAAATATGACATTGATCTCGAGCATTTAACGAAATCATCGCCGAATTCAACAAAGGGACGTAGCAAAACAGGAATGTTGACCAGTGATGAGCTGTTGGAGCAACTTCCGGCACTGCAGCAACTTCTTCACCGACTTATTTGCTGTCAGCCTGAAGGATCAGCTTTCAACAATTATCTAATACAGTATGCATTGGCCTTGATTTTGAAAGAGAGTTTCAAAATATACTGTGCCCTCAATGATGGAATCATAAAACTTGTGGAAGTGTTCTTTGATATGACGAGATATGACGCGGTAAAGGCTATGCATATTTACAAAAGAGCTGGCCAACAGGCTGAAAATCTTGCTGATTTCTATGAATACTGCAAAGGCTTAGACCTTGCTAGGAATTTTCAATTTCCAATTCTGAGACAGCCACCACCTTCTTTTATTGTCACAATGGAAGAATACCTTAAAGAAGCACCTTCATCAGGCAATGTTAAGAGTCTGGAGTATAAAAAAGATGATGAACCACCAAAAGAAGAACCAGAACAAAAAGAAACTGAAAAGCATGAGGTAATTGAGGAGCAAGCTGAAGAAATCAAGGAGGAAGAACCAGTTGATAAGGATCAGACAGAAGAGACTGAACTTCCTCCTTTGATATCAACcgatggtgatgatgatttgCTGGGTCTAAGCGAAATAAATCCGAAAGCTCAAGAACTAGAGGATAGCAATGCTTTGGCACTAGCAATTTTACCACCTGGTGGAAACAATTCGAACAATCTTGCTTTGACTGACATAAGTGGAACTACTGGTTGGGAACTTGCACTCGTTACGACACCAAGCAACCACACGAGCCAAGCACCAGATCGAAAAATGGCTGGTGGATTTGACAAGCTATTGCTAGACAGTTTGTATGAAGATGAAAATGCCAGGAGACAACTTCAACTCCAAACTGCTGGTTATGGATATGGCGGAACGGCTATACATAATCCATTCGATAATTATAATCAGCAAGATCCATTTGCAGTATCGAACAGCTTAGCGCCTCCATCTAATGTACAAATGGCATCAATGGCTCAACAACAAATGATGTTccaacagcagcaacaacaacaaatgatgttccaacaacagcaacaacacaACATGATGGTACCTTATCAGCAACAGCATACTCAGTACCCTCAACAGATGTCAGTTATGGGTTATTCTAATCCATTTGCAGATCCTTTACCTGTACCTAGCTATTCTTATAATTCACTGAACCATCATCAAGGGAACTACAATATAATGTAG 1749 0.3934 MGTFQTWRKAYGALKDSTKVGLAKVHSDYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLSKRLSKTRNWIVAIKTLIVIHRILREGDPSFKEDLVTYSRRVRFLQIIHFKDDSSPLAWDCSAWVRNYAQFLEERLECFRILKYDIDLEHLTKSSPNSTKGRSKTGMLTSDELLEQLPALQQLLHRLICCQPEGSAFNNYLIQYALALILKESFKIYCALNDGIIKLVEVFFDMTRYDAVKAMHIYKRAGQQAENLADFYEYCKGLDLARNFQFPILRQPPPSFIVTMEEYLKEAPSSGNVKSLEYKKDDEPPKEEPEQKETEKHEVIEEQAEEIKEEEPVDKDQTEETELPPLISTDGDDDLLGLSEINPKAQELEDSNALALAILPPGGNNSNNLALTDISGTTGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDENARRQLQLQTAGYGYGGTAIHNPFDNYNQQDPFAVSNSLAPPSNVQMASMAQQQMMFQQQQQQQMMFQQQQQHNMMVPYQQQHTQYPQQMSVMGYSNPFADPLPVPSYSYNSLNHHQGNYNIM 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04574 582 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Tsu04g04574 582 MobiDBLite consensus disorder prediction 318 346 - -
Tsu04g04574 582 SUPERFAMILY GAT-like domain 180 309 - -
Tsu04g04574 582 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Tsu04g04574 582 Coils Coil 333 353 - -
Tsu04g04574 582 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 568 - -
Tsu04g04574 582 MobiDBLite consensus disorder prediction 316 377 - -
Tsu04g04574 582 SMART enth_2 30 161 IPR013809 -
Tsu04g04574 582 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Tsu04g04574 582 Gene3D - 7 161 IPR008942 -
Tsu04g04574 582 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 568 IPR045192 GO:0048268|GO:0072583
Tsu04g04574 582 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Tsu04g04574 582 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04574 Tsu-Chr4 53322896 53326721 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04574 K20044 - gmx:100818165 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04574 04 53322896 53326721 Tsu04g04574 04 53322896 53326721 ECH
Tsu04g04574 04 53322896 53326721 Tsu08g02759 08 42326423 42330936 PCT