Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04563 ATGTATGATTCTACAATCATGTGGAACTCTTTCTGGCGATCTAGAGATCGTTTCTCCTTGGATCAACTCAGATACTTAACTGATCAATTGATAAAAGTTCAAGTTGTTAACGAAGTTAATAAGGATTTTGTTATTGAGGCTCTGAGATCAATTGCGGAGTTGATGACATATGGTGACCAACATGACCCGAGCTATTTTGAATACTTCATGGAAAAACAAGTCATGGGCGAGTTTGTTCGTATTCTAAAACTTAGCAAGACTGTTAGTGTTCCTCTTCAGTTGTTGCAAACAGTTAGCATTTTGGTCCAGAACCTAAGGAATGAGCATGCTATATACTATTTGTTTAGTAACGAACATATAAACTACCTGATAACTTATTCGTTTGACTTTCAAAATGAAGAGCTGTTGTCTTACTACATATCCTTTTTAAGAGCAATAAGTGGGAAATTGAACAAGAATACGGTTTCACTGCTTGTGAAGATTCGCGGTGACGAAGTAGTTTCATTTCCACTGTATGTTGAGGCCATACGCTTTGCCTTTCATGAGGAGAACATGGTTCGCACTGCAGTACGAGCTGTGACCCTTAATGTTTATCACGTTGGAGACGACTCTGTAAATAGATACATATCCAGCGTACCTCACAAAGATTATTTCTCAAACctgatttcattttttaggaAGCAGAGCATGGATTTAAATAAGCTGGTCTCTCATACACTGATAAATCCAGGCCCAAATTCAACCTCTACAATTCTTGCTGCTATAGATGAAATTGAGGACAACCTATACTACTTTAGTGATATTGTTTCTGCTGGTATTCCTGATGTTGGTAGGCTAATTACAGACAGCATTTTGACGGTTTTGGTATTTCCATTACTTCTTCCTTCTCTGAGGATAGCAATTGATAATGACGTACAAAGTGGTGTTGTCACTTCTCTCTACTTACTATGCTGCATTTTGAggataatcaaaattaaagattTGGCAAATACCATAGCTGCTGCTCTTTCTTATCCCTCAGAGGCCTTTACAAAATGTTCTGGGGGTAAATTCAATAGCCATATATCTGATCATGGTTTCCCATCTGAATACCTAGTGTCAAATAATCATAATCTTACCAAGTCTGATATAAGGCACTCAATGTTTAATGTTCCACACTCTTCTAGTTCTTCAGGCTTTCATCCAGAAGGTGTTCTCATGCAAAATGATTGTAGCAATTCAAATTTGTCTTTAAGGGATGTTTTGCTTGCATATGTAACAAAAGGAGACGATATACAAGTATTGGGTTCTTTGAGTGTACTTGTTACGCTACTGCAAACTAAAGAACTTGATGAATCAATGCTAGATGAGCTTGGAATTCTTCCGCAGCGCAAACAACATAAGAAGCTCTTATTGCAAGCTTTAGTTGGTGAGAGTTCAGGTGAAGAGGAacttttttcttccaaaagCAGCTTGACAAGGCATAGCACTGGTAGTGATATTGATGCGTATCATGAAAAGATCAAGGATCGGTACGGAATATCTTGTCAGTCTTCTATTGTTGGAAATAGCCCTCATGTAAATAGATTTCAGGTGATTGATGCATTGGTGAGCCTTTTTTGCCGCTCTAATATATCTGCGGAGACTCTATGGGAGGGTGGTTGGCTTTTGCGTCGGTTGCTTCCTTACAGCGAATCAGAATTCAACAGCCATCACCTTGAATTGTTGAAAGTTTCTTACGACAATTGTGCTGCTGCTCTTGTAGAGGAGGTTAAAGGCATCTGGACCGACTTCCTTATTTCTGTTCTATGTGATGAGTGGCGAAAGTGCAAAAGAGCAATGGAATCATCATCTCCTCCGAAAGAACCAAACTGCGTGCTTTTGCTGCCACATCCACATTATAAATTCTCTTTAGAAGATAACACTCCAAAGGGATCATCATTTGCTGCGGGAGAAAGAATGCAGGAACTGGTCAAGGTATTTGTACTACTGCACCAACTTCAATTATTCACTCTTGGGAGAGCTTTACCTGATCAACCTCCAATTGACCCTACTGGCGATCTTCCCACAAATTGCCGTGCCCAGACTTCTGGGCTTGATGTATCAGGCCCAAAGGCAGGCACTGAAATCAACCTTGttaATGCAGTGCCTTGTAGAATTGCTTTCAAGAGTGGCAAAGAACACCATTTTTGCTTTCGAGCAATCTCTTTAGGAATATCTGGCTGGCTTGTTCTTGCAGAAGAATCGCCATCACTAAAATCCCATGGAATCGTTCGGGTCGCTGCACCTTTGGCTGGGTGTGATCCCAGGATTGATGATACACATTCAACATGGTTACACTTGCGGATCCGGTCATCCTCTTTACCCTTTTTAGATCCTGCCAAATCGAATGACCATGGGAGAATGAAAACAAAAAGTTTGGTTGATGGAAGATGGACATTGGCGTTTAGGGATGAGCAGTCTTGCAACTCTGCTTTAGCGATGATTGTTGAAGAGATCAATATTCTGAGTGATGAGGTTCATAGAAGACTCAAACCTTTGCTCAACCTTGAAACCGCAATAGATTTATCAAGCACACACTTATGTGCTCCTGAGGATTCCTCTAATAGAATACTTCCCAAATCATTGTAA 2610 0.395 MYDSTIMWNSFWRSRDRFSLDQLRYLTDQLIKVQVVNEVNKDFVIEALRSIAELMTYGDQHDPSYFEYFMEKQVMGEFVRILKLSKTVSVPLQLLQTVSILVQNLRNEHAIYYLFSNEHINYLITYSFDFQNEELLSYYISFLRAISGKLNKNTVSLLVKIRGDEVVSFPLYVEAIRFAFHEENMVRTAVRAVTLNVYHVGDDSVNRYISSVPHKDYFSNLISFFRKQSMDLNKLVSHTLINPGPNSTSTILAAIDEIEDNLYYFSDIVSAGIPDVGRLITDSILTVLVFPLLLPSLRIAIDNDVQSGVVTSLYLLCCILRIIKIKDLANTIAAALSYPSEAFTKCSGGKFNSHISDHGFPSEYLVSNNHNLTKSDIRHSMFNVPHSSSSSGFHPEGVLMQNDCSNSNLSLRDVLLAYVTKGDDIQVLGSLSVLVTLLQTKELDESMLDELGILPQRKQHKKLLLQALVGESSGEEELFSSKSSLTRHSTGSDIDAYHEKIKDRYGISCQSSIVGNSPHVNRFQVIDALVSLFCRSNISAETLWEGGWLLRRLLPYSESEFNSHHLELLKVSYDNCAAALVEEVKGIWTDFLISVLCDEWRKCKRAMESSSPPKEPNCVLLLPHPHYKFSLEDNTPKGSSFAAGERMQELVKVFVLLHQLQLFTLGRALPDQPPIDPTGDLPTNCRAQTSGLDVSGPKAGTEINLVNAVPCRIAFKSGKEHHFCFRAISLGISGWLVLAEESPSLKSHGIVRVAAPLAGCDPRIDDTHSTWLHLRIRSSSLPFLDPAKSNDHGRMKTKSLVDGRWTLAFRDEQSCNSALAMIVEEINILSDEVHRRLKPLLNLETAIDLSSTHLCAPEDSSNRILPKSL 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04563 869 SUPERFAMILY ARM repeat 45 555 IPR016024 -
Tsu04g04563 869 Pfam Uncharacterised conserved protein 48 198 IPR019155 -
Tsu04g04563 869 PANTHER UNCHARACTERIZED 7 852 IPR039272 -
Tsu04g04563 869 PANTHER PROTEIN TRANSPARENT TESTA 9 7 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04563 Tsu-Chr4 53242887 53251990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04563 K19513 - gmx:100786267 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04563 04 53242887 53251990 Tsu04g04563 04 53242887 53251990 ECH
Tsu04g04563 04 53242887 53251990 Tsu08g02716 08 41558858 41574513 PCT