Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04532 ATGATGGCAGACCCAACAACTTTCATAGCAACATGGTTTACACCTTCTtccatttttatctttttaaaccTCGTAATTGGTACCATAGCTCTTGCTTCTCGTTTCAATCCTCCACCTAAAAACGACCAAACccaacaacaacctcaacttAATCGTCCACCTTCCTTCATCCACCGTGTCAGGTCCTTCAATCTCCGTCACTACTACCATAACGAACCAACATATGTTCCACAGCTTGAGTCAGAGTCAGAGTCCGAGACAACTCAGCCTCAACTCGTTCGAAAACCGTCTCTGTTAGAGCGAGTCACATCCTTCAACTTCAACAAACACGAACCATCACACCCACAAACGCATTACTCTCAACCCGAGTCAGAGTCCGATTCAACTCAACCACAACTGGTCCGAAAACCGTCTCTGTTAGAGCGGGTCATGTCCTTCAATCTCAACAAACACGAACCAGAACAACCACAAACACATTACTCTCATCCCGAGTCAGAATCAGAGTCAACTCAGCCACAACTCCTTCGAAAACCGTCTCTTTTACAGCGTGTCATGTCCTTCAATCTCAACAAACAGGAACCAGCACAACCCAAATCCGAAAACCCATCTCGGGACCCGAAAGAGAGTAAAGTGGAGATGAAGAAATCAGCGAGCGAGATGAAGTTGGATTGggaggaagaggatgaagaaacTGTAGAGAGAAGGAGGCCAGCGACGGCGGCAGCGAGGAGTGAAACGACGACGTGTAAAGAAGATGAAGCGGTTGATGCAAAAGCTGATGATTTTATTAACAGGTTTAAGAAGCAACTGAGATTGCAGAGACTTGATTCGTTTATCCGATACAGAAACAGCATGTGA 858 0.4289 MMADPTTFIATWFTPSSIFIFLNLVIGTIALASRFNPPPKNDQTQQQPQLNRPPSFIHRVRSFNLRHYYHNEPTYVPQLESESESETTQPQLVRKPSLLERVTSFNFNKHEPSHPQTHYSQPESESDSTQPQLVRKPSLLERVMSFNLNKHEPEQPQTHYSHPESESESTQPQLLRKPSLLQRVMSFNLNKQEPAQPKSENPSRDPKESKVEMKKSASEMKLDWEEEDEETVERRRPATAAARSETTTCKEDEAVDAKADDFINRFKKQLRLQRLDSFIRYRNSM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04532 285 Pfam Cotton fibre expressed protein 252 283 IPR008480 -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 198 249 - -
Tsu04g04532 285 Pfam Domain of unknown function (DUF4408) 8 35 IPR025520 -
Tsu04g04532 285 PANTHER DUF4408 DOMAIN PROTEIN 2 76 - -
Tsu04g04532 285 PANTHER DUF4408 DOMAIN PROTEIN 195 284 - -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 189 249 - -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 150 175 - -
Tsu04g04532 285 PANTHER COTTON FIBER (DUF761) 195 284 - -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 76 94 - -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 108 133 - -
Tsu04g04532 285 PANTHER COTTON FIBER (DUF761) 2 76 - -
Tsu04g04532 285 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04532 Tsu-Chr4 52992351 52993708 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04532 - - var:108322704 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04532 04 52992351 52993708 Tsu04g04532 04 52992351 52993708 ECH
Tsu04g04532 04 52992351 52993708 Tsu08g02657 08 40198589 40199340 PCT