Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04492 ATGATGTCAATCGTGGAGCATGTGGTGTTGTTCAAGATCAAAGAAAACACAACACAATCAGAGATTGATTCCATGGTAGATCGAGTTAATTCCCTCGTCTCCCTCAAAGAGACACTTCACCTCAACATGCTTCCATTAGTAAGTATTCAATCCTCTTCTTCCCTTTCATCTTCCAATTTCACTCACATACTCCATATCCGATTCAGCTCCAAGGAAGATCTTCATGCCTATGCCGTTCACCCTACCCACCTTGAAGTCATCAAAGTCAACTCTCCTTTGGTTGCAGATACCATGGCTCTTGATTGGGTCACCGAAGTTCACGGTAACGACTTGGTTCTGCCATATGGGTCTGCTGTGAGAGTTGTGTTCTTTAAGTTGAAGGAGGGTTTGGGTGAACAAGTTAAAGATGAGGTTTTGAAGGGTATAAGTGGAATTCGACATGAAAATGCTGTTCAATTTACTTGTGGGGAAAATTTCTCTCCTGGTAGAGCTAAAGGATTTTCCATTGCTACCCTTTCTGTTTTTACAGGTTTAAATGAATTGAAAGAAGTTGATTGTGATGAGGAATTTAAGAAATATGACATGAATGATAAGATTAAGGAGAATCTGGACACTATACTGGTTCTTGATTTTGTGGCAAATGGGCAAACAGCTTCTTAA 660 0.4015 MMSIVEHVVLFKIKENTTQSEIDSMVDRVNSLVSLKETLHLNMLPLVSIQSSSSLSSSNFTHILHIRFSSKEDLHAYAVHPTHLEVIKVNSPLVADTMALDWVTEVHGNDLVLPYGSAVRVVFFKLKEGLGEQVKDEVLKGISGIRHENAVQFTCGENFSPGRAKGFSIATLSVFTGLNELKEVDCDEEFKKYDMNDKIKENLDTILVLDFVANGQTAS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04492 219 Gene3D - 116 214 - -
Tsu04g04492 219 Gene3D - 2 107 - -
Tsu04g04492 219 ProSiteProfiles Stress-response A/B barrel domain profile. 5 102 IPR013097 -
Tsu04g04492 219 PANTHER - 2 216 IPR044662 -
Tsu04g04492 219 SMART Dabb_2 118 213 IPR013097 -
Tsu04g04492 219 SMART Dabb_2 5 104 IPR013097 -
Tsu04g04492 219 Pfam Stress responsive A/B Barrel Domain 5 103 IPR013097 -
Tsu04g04492 219 Pfam Stress responsive A/B Barrel Domain 120 212 IPR013097 -
Tsu04g04492 219 PANTHER STRESS RESPONSIVE A/B BARREL DOMAIN PROTEIN 2 216 - -
Tsu04g04492 219 SUPERFAMILY Dimeric alpha+beta barrel 117 213 IPR011008 -
Tsu04g04492 219 SUPERFAMILY Dimeric alpha+beta barrel 2 107 IPR011008 -
Tsu04g04492 219 ProSiteProfiles Stress-response A/B barrel domain profile. 118 211 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04492 Tsu-Chr4 52651855 52653487 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04492 - - lja:Lj3g3v2995900.1 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04492 04 52651855 52653487 Tsu04g04492 04 52651855 52653487 ECH
Tsu04g04492 04 52651855 52653487 Tsu08g02253 08 31055807 31056475 PCT