Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04487 ATGACTGGAATGGAAAAACAAGAAGATGTGGTTAAAGCTGATGTTAAGTTTACATTGTCATCAAAAGATGATAATATTAATAGTGGTACCCAACTTCAAAGGCTGCAGTATCAAGTTACTAAATTGTTTAAGGGTTTTTCAACTTCATTTGATGTTGAAAATCAAAACACTAATTACAATCCTGAAATCCTCACTACTCTCAAGCGTCAATGGGCTGCAAACTTTCACTTGAAGTACATGGGTCAAATGTCTTGGAAAGAGCCCTCACGACTGTTTGAGAGCATGGTGGTTGTTGGACTTCACCCTAATTGTGATGTTCAGGCACTACATAGGCAATTTGTTGATAGAAAACTTGAAGGATCTGGCAAATTGAGAAGTGAACTTGGTTGTCAAAATCAATCTTGTGCAGAATCCAATATTGAACCTCAGGTCTTGTTTGTTTATCCTCCAGAAAAACGGCTGCCTCTTAAATGCAAggatcttctttctttctgtttcCCTGGAGGCTTGGAGGTTCAAGCTGTTGAGAGAACCCCTTCCATGAGTGCgttgaatgaaatttttttcggGCAGGAACACCTTAAACAAATGGATCTTTCATTTGTATTCAGATTACAGGGTTCTGACAATTCAACACTTTATGGGTGTTGTATTTTGGTTGAAGAACTAGTGCAAAAGTCCTCTGGATTGCTGTCTCTGATTTCTGACAAGCAGTCATCCTACTCTTCGTTAAGACGTTATATATTAACCACTCAGAGATGTTACTGCATTCTTTCAAGACTTCCATTTTTTGAACTACACTTTGGTGTATTAAATAGCATCTTCACTCAAGAAAGGTTAGAGAAGTTGACGACAAGTGTTGGAGATTCAAACTTAGAATTTGTTGAAGGTAGCTATGATGAAGAAAACTCAGAGGGAAATTCAGAGAGTGTGTTGGTAAGCGATGGTATAATAGATCACCCGGAGAACCTAAAGGTTGATGGAGAGCTGCAGTCTTATAAGGAGAGAATAGATTATGACAGTGAACTACCTACTGAGCATGAAACTGATAGGACAGCAACCAAAGAAGAATCTGGCCCTACAATTTCTGAAGGTAGTGATGGTCAACCAGAGAACCTCACGGTTGACGGAGAGCTGCAGTCTAATAAGATGATAGATTATGACAGTGTTTTGCCGAATGAGCATGAAACTGAAAGGACAACAGTCAAAGAAGAATCCGGCCCTACAATTTCTGAAGATAGTGATGGTCAACCGGAGAACCTAATGGTTGTTGGAGACCTGCACTCTTATAAGGAGATAATCGATTGTGACAGTGTTGTGCTTACTGAGGATGGAACTGATAGGACAACAGCCAAAGAAGAAACTGACCCTGCAATTTCTGAAGATAGTGATGGTCATCCGGAGATCCTAATGGTTGATGGGGAGCTGCAGTCTTATACGAAAAGAATAGATTATGACAGTGTTGTGCCTACTGAACACGAAACTGATAGGACAACAGCCAAAGAAGAATCTGGCCCTACAATTTCTGAAGATAATGATGGTCAACCGGAGAACCTAGCGGTTGATGGAGAGCTGCACTCTTATAAGGAGAGAATAGATTGTGACAGTGTTGTGCCTACTGAGCATGAAACTGATAGGACAACAGCCACAGAAGAATCTGACCCTAAAATTTCTGAAGATAGTGATCAGAATGGAGATGCTTTTACAACCAGTAAAGAATTAGAAGATAGGAATCTACCCAATGCTATTTTGCCCCTTGTGCATTTTTGCCACTATGAAAGCTCCGAATCATCTTGCAGTTTTCAAGGCTCACCTTGTGAAGACAGAAATTTCAGGAGTGACATTGATGATAATGAGGCAGAAGATGCAACTTTTTCTGGCCAAGAGAAGTTAGATGACTTAAATGATATTCTTGATTGGGCTGTGGAAAATGATCATGGACCCCTACAAATTATATGCAAGTATTACCAGCTAAGTTGTCCTGCCAGGGGTTCAGCACTCACATTTCATCCTTTGGAGCACCTGCATCCCTTGGAATATCATAGACCAGCCGTGACAGTCTTATGTCGTACTGGTTCAACAATTGATTTGAAAAATTTCAGCACTGGTCTGGATTTAGCGGATGCACAGAACACTCTTGTGGTGGAAGAGGCAACTTTGTTATCTGTATGGACTATAGCTTGTTTATGTGGCACCTTGAGACTTGAAAATGTGTTGACATTCTTAGCAGGAGTTCTGCTGGAGAAGCAGATACTTGTTGCCTGTTGTAATTTGGGAATCCTATCTGCTGCAATTTTATCAGTTATTCCACTCATCCAGCCTTATCGATGGCAAAGCCTGCTAATGACAGTTTTGCCAAATGACATGCTTGAGTTTTTAGACGCACCCGTCCCTTATATAGTTGGTatcaagaacaagaacaagaccAGTGAAGCCCCGTCAAAGTTTACCAATGTTATTGTGGTTGATGCCAACAGAAACCAGGTGACGTCACCAACAATGCCACAACTGCCAAGACAGAAAGAGCTAATATCTTCCTTACGCCCTTATCATGCCACTCTTGTAGGAGAAAGTTACTTGGGAAGGAGAAGGCCAGTGTATGACTGCACAGAAATGCAGATTGGAGCTGCAAAGGGGTTCCTTTCGGTGTTGAGGTCTTATTTGGATTCTCTTTGCTATAACATTCGTTCTCACACAATTACCAATGTACAATCAAATGACGATAAGGTATCTTTGCTTTTGAAGGAGAGTTTCATTGACTCGTTCCCGTATCGCGACCGGCCTTTCATGAAGCTTTTCGTGGATACACAGCTTTTTTCTGTACATACAGACATTGTCCTCTCTTCTGTACAAAAGGAATAG 2862 0.4011 MTGMEKQEDVVKADVKFTLSSKDDNINSGTQLQRLQYQVTKLFKGFSTSFDVENQNTNYNPEILTTLKRQWAANFHLKYMGQMSWKEPSRLFESMVVVGLHPNCDVQALHRQFVDRKLEGSGKLRSELGCQNQSCAESNIEPQVLFVYPPEKRLPLKCKDLLSFCFPGGLEVQAVERTPSMSALNEIFFGQEHLKQMDLSFVFRLQGSDNSTLYGCCILVEELVQKSSGLLSLISDKQSSYSSLRRYILTTQRCYCILSRLPFFELHFGVLNSIFTQERLEKLTTSVGDSNLEFVEGSYDEENSEGNSESVLVSDGIIDHPENLKVDGELQSYKERIDYDSELPTEHETDRTATKEESGPTISEGSDGQPENLTVDGELQSNKMIDYDSVLPNEHETERTTVKEESGPTISEDSDGQPENLMVVGDLHSYKEIIDCDSVVLTEDGTDRTTAKEETDPAISEDSDGHPEILMVDGELQSYTKRIDYDSVVPTEHETDRTTAKEESGPTISEDNDGQPENLAVDGELHSYKERIDCDSVVPTEHETDRTTATEESDPKISEDSDQNGDAFTTSKELEDRNLPNAILPLVHFCHYESSESSCSFQGSPCEDRNFRSDIDDNEAEDATFSGQEKLDDLNDILDWAVENDHGPLQIICKYYQLSCPARGSALTFHPLEHLHPLEYHRPAVTVLCRTGSTIDLKNFSTGLDLADAQNTLVVEEATLLSVWTIACLCGTLRLENVLTFLAGVLLEKQILVACCNLGILSAAILSVIPLIQPYRWQSLLMTVLPNDMLEFLDAPVPYIVGIKNKNKTSEAPSKFTNVIVVDANRNQVTSPTMPQLPRQKELISSLRPYHATLVGESYLGRRRPVYDCTEMQIGAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDIVLSSVQKE 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04487 953 Gene3D - 719 889 IPR043153 -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 512 953 - -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 367 415 - -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 4 320 - -
Tsu04g04487 953 SMART DENN_cls 250 827 IPR001194 -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 512 953 - -
Tsu04g04487 953 Pfam DENN (AEX-3) domain 723 825 IPR001194 -
Tsu04g04487 953 SMART uDENN_cls 88 221 IPR005113 -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 337 357 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 389 410 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 358 374 - -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 415 464 - -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 464 513 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 486 574 - -
Tsu04g04487 953 Gene3D - 80 290 - -
Tsu04g04487 953 ProSiteProfiles Tripartite DENN domain profile. 546 953 IPR037516 -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 486 508 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 388 419 - -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 320 367 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 337 374 - -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 415 464 - -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 4 320 - -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 523 561 - -
Tsu04g04487 953 Pfam uDENN domain 142 219 IPR005113 -
Tsu04g04487 953 MobiDBLite consensus disorder prediction 446 466 - -
Tsu04g04487 953 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 464 513 - -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 320 367 - -
Tsu04g04487 953 PANTHER DENN (AEX-3) DOMAIN PROTEIN 367 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04487 Tsu-Chr4 52607082 52618339 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04487 - - mtr:MTR_4g125480 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04487 04 52607082 52618339 Tsu04g04487 04 52607082 52618339 ECH
Tsu04g04487 04 52607082 52618339 Tsu08g02262 08 31270799 31283790 PCT