Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04484 ATGGACCCAAaaaaacaacaagaacaaccttcttcttcttcttctcttcctcgACCGAAAGATTTAGCTGTTATCATACAACAACTAAAGGGTCATGATTTTTTGGACAAGGAAATTTCTATCATGTTGTCTACCAGATTTGAAACAGCACCTGAACCTTTTCTCAAGAGAAGAATTCAAGAAGATGACACTGATGCTTATTACTTAGGTCTCTTACCACAAGAAGCTTATGCCTCTTCTCCTAAACGTACAAAATTCTACAACTTTTTGAACGATTTCGATGATCCTAACGGCAAGAAACCGCTCATTGATGATAACAACGACACCACCATCGTTGTCAGTGACAGTGACAACGATGATGGTGATCAGAGGACAGGAAATCGAATACCGTTGGTTTTTGACATCAATGGCCATGACAGTGAAGCTGAAAATGATCAAAGTGATGATAACAATGATGACGAGGCTCGGATGAGAGAGGCTCAGATGAGAGAGGCTCAGAGGAGAGAGTTAATTCTTCAAAACATGCTCGCGGATAATGATCGACAGCAAAGGcaatatataaaagaaactgCAAAAAGATATGCATCACATATTCACAGTGTTCCTGAGAATAAAGTTGGTGATCACAATGTGGCAAATGTAATTGATGATGACTCTTCAACTCCTTTCTCTGAAGCAATCAAAGCTATTCAAGAACGAGttgagaaaaacaagaaaaaagggATTGTTGATGAATCCCTTAATTGGGTTTCTAAATGGAACGGAGAAGATTTTGTTAACAGAAGATTTTTGGTTCCTTCGTTGCTAGATATGTCTCTTAATGTTCTTGCTAAGCATGCTGATGCAATGGTTTTGATTGACGATGTTGCTGAGGAGCTAAAACTCAGGCTTAGCAATTTGCTATGTGATTCGAGAAGAATGAACAGTCACGTTCTTGAACTGCTTCTTAGAGGGTCTCCGAATGTGATTCGGCTTAAAGATTGTTCTTGGTTGACAGAGGAAGAATTTACAAGATATTTTGGAAAGTTGAACACTTCCATAATAGAGGTGCTACATCTTAACCAGTGCGGACGAGTTGTAGCTGAGCCTACATTACTTGCTACTGTGGCAAAGTCACCAAGCTGCTTGTCAAAATTGATTAGTCTGTCCCTCACTGGTGCATGCCGTCTTACTGATAAAGGATTGCAGTTACTACTTTCTTCTGCTACGGCACTTGGATCCATAAATTTAAGCCAATGTTCCCTTCTCACTTTTGCCGGTGTTAATATTTTGGCTAATTcattaggatcaattttgaaaGAGTTGTATCTTGATGATTGCATATTGATTGATGCTTCACTAGCTTTGCCAGCATTGAAGCGATTTGAACAATTAGATGTGTTGTCAGTGGCGGGACTTCCAACCGTTTCTGATAAATTTATCAACAGTTTCATCGTTGCACGTGGTCACAACATTAAGGAGCTTGTTTTAAAGGACTGCGGAAATTTGACTGATGCATCTATTAAAGTCATTGCTAAACATTGTCCTGGATTGCAAGTGCTTGATCTTATGAACTTGTGCAAATTGACGGACTTATCCATAGGTTATCTTACTAATAGTTGTGGAGCATTGCGTACATTGAAGCTTTGCCGCAATCCATTCAGCGATGAAGCAATTGGTGCATTTTTGGATGTAACCGGAAATTCCTTGGAAGAACTTTCACTTAATAACATTAAGGTTGGCCAACATACAACCTTATCACTTGCAAAAAAGGCCAAAAATTTGCATACTTTAGATCTATCTTGGTGTCGAAATTTGTCAGACAATGAGTTCGGGTTAATTGTGGATAGTTGTTTGTCACTGAGGTTTCTTAAACTTTTCGGTTGCTCACAGGTAACAGATGTTTTTCTGAAAGGGCACTCAAACTCAGCGCTTCAGATCATCGGGTTGAAGTTGTGTCCTTTATTGCAGCATATGGAAGGGACTGATCCTCATCAAAGTGCTTTGCGATATGCACCAATCAAGCAGTAG 2010 0.3771 MDPKKQQEQPSSSSSLPRPKDLAVIIQQLKGHDFLDKEISIMLSTRFETAPEPFLKRRIQEDDTDAYYLGLLPQEAYASSPKRTKFYNFLNDFDDPNGKKPLIDDNNDTTIVVSDSDNDDGDQRTGNRIPLVFDINGHDSEAENDQSDDNNDDEARMREAQMREAQRRELILQNMLADNDRQQRQYIKETAKRYASHIHSVPENKVGDHNVANVIDDDSSTPFSEAIKAIQERVEKNKKKGIVDESLNWVSKWNGEDFVNRRFLVPSLLDMSLNVLAKHADAMVLIDDVAEELKLRLSNLLCDSRRMNSHVLELLLRGSPNVIRLKDCSWLTEEEFTRYFGKLNTSIIEVLHLNQCGRVVAEPTLLATVAKSPSCLSKLISLSLTGACRLTDKGLQLLLSSATALGSINLSQCSLLTFAGVNILANSLGSILKELYLDDCILIDASLALPALKRFEQLDVLSVAGLPTVSDKFINSFIVARGHNIKELVLKDCGNLTDASIKVIAKHCPGLQVLDLMNLCKLTDLSIGYLTNSCGALRTLKLCRNPFSDEAIGAFLDVTGNSLEELSLNNIKVGQHTTLSLAKKAKNLHTLDLSWCRNLSDNEFGLIVDSCLSLRFLKLFGCSQVTDVFLKGHSNSALQIIGLKLCPLLQHMEGTDPHQSALRYAPIKQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04484 669 Gene3D Ribonuclease Inhibitor 477 554 IPR032675 -
Tsu04g04484 669 PANTHER UNCHARACTERIZED 141 665 - -
Tsu04g04484 669 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g04484 669 Gene3D Ribonuclease Inhibitor 348 476 IPR032675 -
Tsu04g04484 669 Gene3D Ribonuclease Inhibitor 558 656 IPR032675 -
Tsu04g04484 669 SUPERFAMILY RNI-like 349 601 - -
Tsu04g04484 669 MobiDBLite consensus disorder prediction 134 164 - -
Tsu04g04484 669 PANTHER F-BOX/LRR PROTEIN 141 665 - -
Tsu04g04484 669 SMART LRR_CC_2 611 644 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 585 610 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 508 533 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 534 558 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 376 401 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 482 507 IPR006553 -
Tsu04g04484 669 SMART LRR_CC_2 402 427 IPR006553 -
Tsu04g04484 669 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04484 Tsu-Chr4 52580180 52583514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04484 K15082 - gmx:100798274 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04484 04 52580180 52583514 Tsu04g04484 04 52580180 52583514 ECH
Tsu04g04484 04 52580180 52583514 Tsu08g02281 08 31811702 31817782 PCT