Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04277 ATGGGAGTCACAACCTTTACACATGAGTACTCTTCATCCGTTGCGCCATCGCGCATGTTCACAGCTTTGATCGTGGACTCTAGAAATTTGCTTCCTAAGCTCTTGCCGCAGTTTGTGAAAGATGTCAATATAATTCAAGGAGATGGAGGAGCTGGAACCATTGAACAAGTCAACTTCAATGAAGGTAGTCCCTTCAAATATCTGAAACAAAAGGTCGATGTACTTGATAAGGAGAATTTGGTTTGCAAATACACTATGATTGAAGGGGATCCATTAGGGGACAAGCTTGAATCTATTGCTTATGAGGTGAAATTTGAGGCTACCAATGATGGAGGTTGTTTATGCAAAATGGCAAGTAGTTACAAGACCATTGGAGATTTTGATGTTAAAGAGGAAGATGTAAAAGAAGGAAGGGAAAGCACTATTGGAATTTACAAAGTTGTTGAGTCATATCTGCTGGAGAATCCACAAGAGAAAAGTTTCAAGGTGGGTGAATGGATGTTTTTGAAACTCCGTCCACATCGACAGAAAACAGTTGTATCATGTATCAATGTGAAGCTGGGGGCAAGGTTTTATGGTCCTTATCAAGTGTTGGAGCGGATTGGGGCAGTGGCGTCTAGGTTGAAGTTACCGGAAGGAGCTAAAGTTCATCCCGTTTTCCACGTATCATTTGCTCAAAAAGGCAGTAGGCAACTACCTACTGGGTTAGAAGGAGATTTTCAAGGGAATTATCATTGCTATAAGACATAA 750 0.4107 MGVTTFTHEYSSSVAPSRMFTALIVDSRNLLPKLLPQFVKDVNIIQGDGGAGTIEQVNFNEGSPFKYLKQKVDVLDKENLVCKYTMIEGDPLGDKLESIAYEVKFEATNDGGCLCKMASSYKTIGDFDVKEEDVKEGRESTIGIYKVVESYLLENPQEKSFKVGEWMFLKLRPHRQKTVVSCINVKLGARFYGPYQVLERIGAVASRLKLPEGAKVHPVFHVSFAQKGSRQLPTGLEGDFQGNYHCYKT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 CDD Bet_v1-like 5 152 - -
Tsu04g04277 249 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Tsu04g04277 249 Gene3D - 2 158 IPR023393 -
Tsu04g04277 249 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 157 - -
Tsu04g04277 249 SUPERFAMILY Bet v1-like 2 157 - -
Tsu04g04277 249 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Tsu04g04277 249 PANTHER - 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04277 Tsu-Chr4 50912477 50913832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04277 - - gmx:100527307 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04277 04 50912477 50913832 Tsu04g04277 04 50912477 50913832 ECH
Tsu04g04277 04 50912477 50913832 Tsu07g01790 07 17721096 17721976 PCT
Tsu07g01794 07 17760519 17761548 Tsu04g04277 04 50912477 50913832 PCT