Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04246 ATGGCTATCATAACTACTCTCACCGGCAAACGCCCTCACCGTTGGCTTTCCGTTAATCACAACCATCAATCTCCCAATTCTTCACGATTCAAAAGACAGAAAGTTTCAACCATGTCCAACAACACACCATCACCATTAtccaccacaacaacaacaacaaccaacgCCACTCTTTCCAGAATTTCCCGTTACCCTGAAACTAAACCACCTTTGCGTAGAGAGGTTCACGCTCCATGTAGTAGACCGCGTAAATttgatttatcaattaattCGAAATCAGAATCATCGAATTTGATGGCTAGTGGTATTAGCAATGTGTTAATCGAAAAATACCAGCAGACGAAACATTCTGCATTGGCTACAATTGCGTTAAGGGCgaagggaaaagaaaaagataataattatAAGGAACTTgtttcaaaagattcaaatgTTGAAGATGTAAGGGAGCTGCGCTCTGCGGTGAAAGACCGCAATTGGAAGGAGAATGATTTGGTTCATTTGGATAGTGGGGTTGGTGTTCAGAAACAGTCAACTTCATCTGTGGTTTCTGAGTTGAGTGGCGGTAAATTGAATGAGTGTGATGCTGCTAAGATGTTGGATACTTTGTCTTTGAATCCGGAGAATGATCTTTCCGGTGTTCGTGCTTACAAGAAATTGCTTGAGGCTGTTGATAAGAGATCAGATACGATTGGtagattgaaatttgaaattcagCTTAATGAGAAGCGCAGATCCGCATTTGATTTGTCACGTCCAAAGAAGGAACCAGTAGAGGAAGTGCCGTGGGAACCTTTTGTTCCTCTTACAAAAGAGGAAAAAGTTGAGGTTGCACGAGCCTTTTCTGCCAACCGGAAGAAGGTCCTGGTTGCTCATGAGCAATCCAATATTGAAATATCTAGCGAAAAGTTTCAGTGTCTTAGGCCAAGTGGATGGTTGAACGATGAGGTGATAAATTTGTACCTCGAGTTGCTGAAAGAGAGGGAGAGAAGAGACCCTCAGAAGTATTTGAACtgtcattttttcaataccTTTTTCTATAAGAAGTTAATAAGTGGCAAGAATGGGTATGATTACAAATCTGTGAGGAGATGGACTACTCAAAAGAAATTGGGATACGGCCTACATGAATGTGATAAAATATTTGTACCTATTCATCAGCAGATCCATTGGTGCTTAGCTGTTATTAATAAGAAGGAAAAGAAACTCCAGTATCTTGATTCACTGAAAGGAATTGATATCCAAGTGCTGGATATGCTGGCAAGATATTTTGTAGATGAAGTCAAGGACAAGACTGGAGAAGATATTGACATTAGTTGTTGGGAAAAAGAATTTGTTGAAGATCTTCCTGAACAGAAGAATGGGTATGATTGTGGGATGTTTATGGTCAAATATGCTGACTTTTATAGCAGAAACTTGAGGCTGTGTTTCAACCAGGAACATATGCCTTACTTCCGGCTTAAAACGGCTAAGGAAATCTTGAGATTGAAAGCTGACTAA 1500 0.3747 MAIITTLTGKRPHRWLSVNHNHQSPNSSRFKRQKVSTMSNNTPSPLSTTTTTTTNATLSRISRYPETKPPLRREVHAPCSRPRKFDLSINSKSESSNLMASGISNVLIEKYQQTKHSALATIALRAKGKEKDNNYKELVSKDSNVEDVRELRSAVKDRNWKENDLVHLDSGVGVQKQSTSSVVSELSGGKLNECDAAKMLDTLSLNPENDLSGVRAYKKLLEAVDKRSDTIGRLKFEIQLNEKRRSAFDLSRPKKEPVEEVPWEPFVPLTKEEKVEVARAFSANRKKVLVAHEQSNIEISSEKFQCLRPSGWLNDEVINLYLELLKERERRDPQKYLNCHFFNTFFYKKLISGKNGYDYKSVRRWTTQKKLGYGLHECDKIFVPIHQQIHWCLAVINKKEKKLQYLDSLKGIDIQVLDMLARYFVDEVKDKTGEDIDISCWEKEFVEDLPEQKNGYDCGMFMVKYADFYSRNLRLCFNQEHMPYFRLKTAKEILRLKAD 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04246 499 Pfam Ulp1 protease family, C-terminal catalytic domain 312 493 IPR003653 GO:0006508|GO:0008234
Tsu04g04246 499 SUPERFAMILY Cysteine proteinases 265 497 IPR038765 -
Tsu04g04246 499 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 49 150 - -
Tsu04g04246 499 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 178 498 - -
Tsu04g04246 499 Gene3D Adenoviral Proteinase; Chain A 258 497 - -
Tsu04g04246 499 MobiDBLite consensus disorder prediction 17 54 - -
Tsu04g04246 499 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 49 150 - -
Tsu04g04246 499 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 178 498 - -
Tsu04g04246 499 ProSiteProfiles Ubiquitin-like protease family profile. 297 469 IPR003653 GO:0006508|GO:0008234
Tsu04g04246 499 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04246 Tsu-Chr4 50660077 50666634 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04246 K08592 - gmx:100797013 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04246 04 50660077 50666634 Tsu04g04246 04 50660077 50666634 ECH
Tsu04g04246 04 50660077 50666634 Tsu07g01847 07 18525116 18532882 PCT