Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04229 ATGGAGGAACCTAGCCAACTGAAACGTGCCATAATTGATTCTTCTGCTGGAGCAATTTCTGGTGGAATTTCTCGTACAGTAACATCACCTCTTGATGTTATTAAGATTAGATttcagGTTCAGCTTGAACCAACAACTTCATGGGCTTTACTACGCAAAGATTTAGTTGTAACTGCGCCGTCAAAGTATACTGGTATGTTTCAGGCCAGCAAAGATATTCTTAGAGAAGAAGGCTTAAAGGGATTTTGGCGGGGAAATGTACCGGCGTTGCTCATGGTTATGCCATATACAGCAATTCAATTTACAGTTTTACACAAGTTAAAGACTATTGCATCCGGTTCTTCCAAAACAGAGAATCACACTAATTTGAGCCCGTATCTATCCTATGTCAGCGGCGCGCTAGCTGGGTGTGCAGCTACTGTTGGTTCATATCCTTTTGATCTTCTCCGAACCATATTAGCTTCTCAAGGCGAGCCAAAGGTATATCCAAACATGAGATCGGCATTCATGGATATCATCCACACTCGTGGATTTCAAGGCATGTATGCTGGATTGTCTCCGACTCTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGAACCTATGATACATTTAAGCGTTGGGCCACGACTTGGAACCATAATAGATATTCCCACACCACTGGAGACGATAGTCTATCTAGCTTTCAGCTTTTCATTTGTGGGTTGGCGGCTGGAACATGTGCCAAACTTGTCTGTCATCCTCTTGATGTTGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCTAGATACGGAGCTCGAGTTGAGCATCGAGCATATAGTAATATGTATGATGCCGTGCAACGGATATTTCGGTCGGAAGGTTGGGCTGGACTATACAAGGGGATAATTCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCATATGAAATGGTATCAGATTGGCTAGAGTCCTTGACTTAA 990 0.4273 MEEPSQLKRAIIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTTSWALLRKDLVVTAPSKYTGMFQASKDILREEGLKGFWRGNVPALLMVMPYTAIQFTVLHKLKTIASGSSKTENHTNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIHTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWATTWNHNRYSHTTGDDSLSSFQLFICGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMYDAVQRIFRSEGWAGLYKGIIPSTVKAAPAGAVTFVAYEMVSDWLESLT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04229 329 SUPERFAMILY Mitochondrial carrier 10 320 IPR023395 -
Tsu04g04229 329 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 3 327 - -
Tsu04g04229 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Tsu04g04229 329 Gene3D Mitochondrial carrier domain 5 327 IPR023395 -
Tsu04g04229 329 PANTHER SOLUTE CARRIER FAMILY 25 3 327 - -
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Tsu04g04229 329 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Tsu04g04229 329 Pfam Mitochondrial carrier protein 227 325 IPR018108 -
Tsu04g04229 329 Pfam Mitochondrial carrier protein 14 111 IPR018108 -
Tsu04g04229 329 Pfam Mitochondrial carrier protein 123 210 IPR018108 -
Tsu04g04229 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Tsu04g04229 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04229 Tsu-Chr4 50551183 50556215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04229 1 327 Organic Solute Cotransporters AT3G21390 73.795 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04229 K15108 - gmx:100784986 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04229 04 50551183 50556215 Tsu07g01884 07 19033084 19040520 PCT