Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04043 ATGGGTTATCAAAAAACACTTCTGGgtatgtttttttggttttacttAGTAAGCTTAAGCTTCATTGGAGTGAATGGAATAGCAGTAAGTGCTGGTTCAGTTGAGAAAGGGGTTGTTGTCATTCATGGTAAATGTCCTATTGGAAGGATtcataatgattttgtttgtgcAACTCTTGATTGGTGGCCACCTCAGAAATGTGACTGGGGAAAATGCAGTTGGGGTCATGCTTCTTTGCTTAATCTGGACCTcaacaataaaattttgttaaatgcAGTAAAAGCTTTTTCACCCTTGAAAATTAGATTGGGTGGTACCTTGCAAGATAAAGTCACATATGGAACTGCAGATAATAAGGAACCTTGTACTTCATTTGTTTTGAATCCTGATATAATGTTTAGTTTCACTCAAGGGTGTTTACCAATGCAAAGATGGGATGAACTAAATAGCTTTTTCCAAAAAGCAGGGGTTAAAGTTATATTTGGATTAAATGCTCTTGCCGGAAGATCTGTGTCTGTGCATGGTGGTATTGCTGTTGGACCTTGGAACCCCACCAATGCCGAGTCTTTTATACGTTATACTGTTAGCAAGAAGTACAATATTCATGGTTGGGAATTCGGTAATGAATTGTGTGGAGGTGGAATCGGAGCAAATGTTGCGGCAGATCAATATGCTTCTGATGTAGTTGTTTTAAGAAAGATAGTTCAAGATGTATATAGAGGGGTTGAGCCAAAACCATTAATCATTGCACCTGGAGGCTTTTTCGATGGCGCTGCCAATTGGTTTAAGGAATTCTTAAACAAATCGGACGAATCTGCAAATGCGGTCACCCACCACATTTATAACCTTGGACCAgGAAGTGATGATCACGTAGTCGAAAAAATTCTTGACCCAACCTATCTTAATGAGGTGGCCAACACTTTCAGCGGTCTTAAAAATGTACTTCAAAGTTCAGGAACCTCAGCTGAAGCATGGGTTGGTGAAGCAGGAGGGGCTTATGGCAGTGGCTGTCATCTTGTGTCTGATGCATTTGTCAACAGCTTCTGGTatttggatcagcttggtatGTCAGCTACTTACGGCACCAAGACATATTGCAGACAGACTTTGATAGGAGGAAACTATGGTTTATTGAATACTACTACTTTCAATCCGAATCCAGACTATTATAGGTACTGA 1179 0.3783 MGYQKTLLGMFFWFYLVSLSFIGVNGIAVSAGSVEKGVVVIHGKCPIGRIHNDFVCATLDWWPPQKCDWGKCSWGHASLLNLDLNNKILLNAVKAFSPLKIRLGGTLQDKVTYGTADNKEPCTSFVLNPDIMFSFTQGCLPMQRWDELNSFFQKAGVKVIFGLNALAGRSVSVHGGIAVGPWNPTNAESFIRYTVSKKYNIHGWEFGNELCGGGIGANVAADQYASDVVVLRKIVQDVYRGVEPKPLIIAPGGFFDGAANWFKEFLNKSDESANAVTHHIYNLGPGSDDHVVEKILDPTYLNEVANTFSGLKNVLQSSGTSAEAWVGEAGGAYGSGCHLVSDAFVNSFWYLDQLGMSATYGTKTYCRQTLIGGNYGLLNTTTFNPNPDYYRY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04043 392 Gene3D Glycosidases 72 392 - -
Tsu04g04043 392 PANTHER HEPARANASE-LIKE PROTEIN 3 5 390 - -
Tsu04g04043 392 Pfam Glycosyl hydrolase family 79, N-terminal domain 37 355 IPR005199 GO:0016020|GO:0016798
Tsu04g04043 392 PANTHER HEPARANASE-RELATED 5 390 - -
Tsu04g04043 392 SUPERFAMILY (Trans)glycosidases 50 391 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04043 Tsu-Chr4 49065857 49069019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04043 33 390 Glycoside Hydrolase AT5G61250 50.975 1.92e-132 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04043 K07964 - gmx:100778008 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04043 04 49065857 49069019 Tsu04g04043 04 49065857 49069019 ECH
Tsu04g04043 04 49065857 49069019 Tsu08g02155 08 29274222 29278511 PCT