Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03952 ATGAAATTCGGTAAGAGTCTAAGTAGCCAGATCGAAAAAACTCTACCAGAATGGCGCGACAAGTTTCTCTCCTACAAAGAACTCAAGAAGAAGCTCAAGAACTTAGAACCCGCTGCCGCATGCGGCGCTGACGATCGCCCTGCAAAGCGTCTTAGGATTGATTCCGGCAACGGCGATTCTGTCACCGACGTCGGAGAAATGTCTAAGGAAGAAAGCGATTTCAGGAACTTGTTGGAGAATGAACTCGAGAAATTCAATAACTTCTTCGTTGAGAAAGAGGAAGAGTACATTATTAGACTCAAGGAGTTGCAAGATAGAGTTGCTAAAGTGAAGGATTATAGTGAAGAGATGATGAAAATTCGCAAAGAAATTGTTGATTTCCATGGAGAGATGGTTTTACTGGAGAATTACAGTGCCCTGAATTACACAGGGCTAGTGAAAATACTTAAAAAGTACGACAAGAGAACTGGTGCTCTCATTCGCTTGCCCTTCATTCAGAAGGTCTTGCAACAACCTTTCTTTACCACCGACATGCTCTACAAGCTTGTAAAAGAGTGTGAAACAATGCTGGACTACCTTTTTCCTGTGAACGTTCCTACAGCTGTTGGCGAGCTTATCCCTGAAGCTGAAGGATGTGATCCATCAACTTCAACCACCACCGAGAGAGATGGTTTGCTGATTCCTAAGGAATTAGCAGAGATTGAGTACATGGAGAGCCTTTATATGAAGAGTACTGTCTCAGCTTTGCATGTTTTGAAGGAAATTAGAAGTGGAAGCTCAACGGTTAGCATGTTTTCATTGCCACCGTTGCAATCAGGTGGATTGGAAGAAACATGGAACAAAGTACCAGTTTTGGAACAAGCAGCCAAGTAA 873 0.4296 MKFGKSLSSQIEKTLPEWRDKFLSYKELKKKLKNLEPAAACGADDRPAKRLRIDSGNGDSVTDVGEMSKEESDFRNLLENELEKFNNFFVEKEEEYIIRLKELQDRVAKVKDYSEEMMKIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDMLYKLVKECETMLDYLFPVNVPTAVGELIPEAEGCDPSTSTTTERDGLLIPKELAEIEYMESLYMKSTVSALHVLKEIRSGSSTVSMFSLPPLQSGGLEETWNKVPVLEQAAK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03952 290 Coils Coil 75 95 - -
Tsu04g03952 290 Pfam SPX domain 116 168 IPR004331 -
Tsu04g03952 290 Pfam SPX domain 1 37 IPR004331 -
Tsu04g03952 290 ProSiteProfiles SPX domain profile. 1 166 IPR004331 -
Tsu04g03952 290 CDD SPX_AtSPX1_like 2 155 - -
Tsu04g03952 290 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 290 IPR031142 GO:0016036
Tsu04g03952 290 PANTHER SPX DOMAIN-CONTAINING PROTEIN 2 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03952 Tsu-Chr4 48223186 48225787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03952 - - gmx:100813365 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03952 04 48223186 48225787 Tsu04g03952 04 48223186 48225787 ECH
Tsu04g03952 04 48223186 48225787 Tsu03g02751 03 36659788 36661876 PCT