Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03660 ATGAACACCATGACGACGCCGTTTCAACAAGGACCACCGCAAACGGTCAGAAGATTGGCGGTCGAAGTTGTTGATGCACGCAACCTTCTTCCTAAAGATGGTCAAGGGAGTTCCAGTCCTTATGTTGTGGCGGATTTCGATGGTCAGAGAAAACGAACCACCACCCGGTTCAAAGAGCTTAACCCGGTTTGGAACGAGTCACTTGAGTTCATTGTTTCCGACCCGGAAAATATGGAGTTTGAAGAGCTTGAAGTTGAGGTTTATAATGATAAGAAATTTGGGAATGGTAGTGGACGGAAGAATCATTTTCTCGGTAGAGTGAAGCTTTATGGAACACAGTTTTCAGGTAGAGGTGAAGAAGCTTTGGTTTATTATACGTTGGAGAAGAAGAGTGTTTTCAGTTGGGTTAGAGGTGAAATCGGTCTCAAGATTTATTACTACGATGAGATGTTACAGCAAGAAgagcaacaacaacagcaacaggAACAACAACCGCCGCCGGAAGAAGAGCGACACGGTGGTGGCAATGAGCAAGAGAGGAACAGGCCTCCGATGATGGTTGAAGAGGGAAGGGTTTTTCAGGTTTCTGAACAAATGGAGCATTGTGTTCCACTTCCAGATGGTCCACCTTCACCGCGTGTTGTGGTTATGGAAGAATCACCTTCTCCGGTGGTTCGTGTTCAACAGGATCCACCTTTGCCGGAGATGTATGGTCCACGGGAACCTGAAATGCAGTATCACCACCAGCCAGAAGTGAGAAAAATGCAAGCAATGAGAAATGATAGAGTGAAGATTATGAAAAGACCGAACGGTGGTGGTGATTATGCTCCTAAAGATATCTCCGGTAAGAAACCAAACGGTGAATCTGATAGGATTCATCCCTATGATCTAGTTGAGCCAATGCAGTATCTGTTTGTTAGAATCGTGAAGGTTCGTGGGCTTAATCCTCCAACTGAAAGCCCATTTGTAAAGGTTAGAACGTCAAGTCATTATGTTAGATCGAAGCCCGCTAGTTACCGGCCCAACGAGCCCAACGACTCGCCGGAATGGAATCAGGTGTTTGCTTTGGGTTACAATAAAACCGACGCAACCGGTGCCACGTTGGAGATTTCCGTTTGGGATTCACCAGCGGAACAATTTCTCGGTGGCGTTTGTTTTGATCTCTCTGATGTACCTATTCGAGATTCTCCAGATAGTCCTCTTGCTCCACAATGGTACCGTCTCGAAGGTGGTGCTGCTGAACAAAACTCCGGTAGAGTCTCTGGTGATATACAGCTTTCCGTTTGGATCGGAACTCAATCCGATGACGCTTTTCCAGAAGCATGGAGTTCCGATGCACCGTATGTGGCGCATACTCGTTCGAAGGTTTATCAATCCCCGAAGCTTTGGTACCTAAGAGTTGTAGTAATGGAAGCACAAGACCTGAATCTGACTCCGAATCTACCTCCATTAACGGCGCCGGAAATAAGAGTAAAGGTTCAATTAGGGTTTCAATCACAGAGAACGAGAAGAGGATCAATGAATCACCACAGCATGTCGTTTCACTGGCACGAAGATCTTCTCTTCGTAGCCGGAGAGCCACTAGAAGATTCCATGGTCCTTCTGGTAGAAGATCGCACCACCAAAGAAGCGGCGTTACTTGGCCACGTGGTAATTCCTCTTACTTCAATTGAGCAGCGAATAGACGACCGCCACGTGCCAGCCAAATGGTTTCCATTAGAAGGGGGAACCTACTGCGGACGAGTCCACCTACGTCTCTGTTTAGAAGGTGGATATCACGTGCTTGATGAAGCGGCGCACGTTTGCAGCGATTTCCGTCCCACCGCGAAATCTCTCTGGAAACCACCCGTTGGAATACTTGAACTTGGAATCCTAGGCGCTCGTGGTCTCCTCCCGATGAAATCCAAGGGTCCAGGAAAAGGTTCCACCGATGCTTACTGTGTAGCGAAATACGGTAAAAAATGGGTAAGAACACGAACCGTAACGGATAGCTTTGATCCACGGTGGAACGAACAGTACACGTGGCAGGTATACGATCCATGTACAGTCTTGACCGTAGGTGTATTTGACAACTGGCGTATGTTTGCTGACGTGTCAGAAGAAAGACCAGATTGCCGTATAGGAAAAATTCGCATACGAGTCTCTACGCTAGAAAGCAACAAAATCTACACAAGTTCATATCCTTTACTTGTTCTAACTCGAACCGGTTTAAAGAAAATGGGTGAAATCGAGTTAGCTGTTCGTTTCGCTTGCCCAAGTTTTATGCCTGACACGTGTGCAGTTTATGGACAACCATTACTTCCAAAAATGCACTACATACGCCCCCTTGGCGTGGCTCAGCAGGAAGCTCTCCGTGGCGCAGCCACCAAAATGGTGGCGCAGTGGCTGGCGCGGTCTGAGCCGCCAATGGGACATGAAGTTGTTCGTTACATGTTAGATGCTGACTCACACGCGTGGAGTATGAGGAAAAGTAAAGCGAATTGGTTTAGAATTGTTGCAGTTTTATCCTGGGCCGTTGGATTAGCTAAATGGTTAGATGATATAAGAAGATGGAAAAATCCAGTTACAACGGTTTTACTTCATATACTTTACTTAGTCCTTGTTTGGTATCCAGATTTAATTGTTCCAACCGGGTTTTTATACGTTGTTTTAATTGGAATTTGGTATTACCGTTTTAGACCTAAAATACCTGCTGGTATGGATACAAGATTATCACAAGCTGAAGCTGTTGATCCAGATGAATTAGATGAAGAATTTGATACCATGCCTAGTTCCAAACCACCTGATTTGGTTCGGATTAGGTATGATAGGTTAAGAATGTTGGCTGCAAGGGTGCAAACTGTTTTGGGTGATTTTGCTACACAAGGAGAAAGGGTTCAAGCATTGGTTAGTTGGAGAGATCCAAGAGCTACGAAGCTGTTTATTGGAGTGTGTTTTGTTGTGGCTATTATACTGTATTCTGTGCCTCCTAAAATGGTTGCTGTTGCTTTAGGATTCTATTATCTTCGCCATCCAATGTTTCGGAATCCTATGCCTCCTGCTAGTTTGAACTTTTTCCGACGACTTCCTAGTTTGTCTGATAGGGTGAGGAAGAAAGGACAAGCACTAGCTGTTTGGATTCTGAAAAAGTTGTTGTCCTTAATTACAGTAACTTTCATTGTTAGTGTTAGGAGTGAAAAGGGTTGTGAGAAAGTGGGTCCTGGGATATTTTCAAATCTTGGAGATAAGGCCAAAGatgttCTTTACAAGGACTATGCTGAACAATCACCAATTCACTTTCACTACAAATTCATGGATTGGAATGCAGGCTTCGCTTGTAAAGTTGTAGAAATTGTACCTGGAGTCAGGACCGTTTTCAAATGTAACATACCGGATTCCGGGAAGGTGGAACTACAATACTTGAATAAATTCGCTGGGATTACCGGACGCATTGGATTATTAGGAAACGAAGGAGGAGCATATGACCCTGTTGTAAACTTCTCAGGGCTATTAGGAACAAGAATTGTATCCTTGGGAGCCAATGTTGCCTTACACATACCAACAAGATCAATAACCAAGCTGAATGCCGGCTTCGGCTTCAACAGTGCCTTCCTTGAAGCTTCATTAACCTTTCATGACAGCTTTGACACTCTAAAAGCGACATTTTATCACGAAGTGAACCCCCTAACCCAGACTGCCATTGCAACACAGGTGAAGCACAGCTTGTCACTCCAGGAAACTGGTGTCACCATTGGTGTTCAGCATGCATTTTTTCCTCAAACGTTGTTAAAGGCTCGATTTGACAGTGCTGGCAAGGCTGGGGCTCTCATTCAACAAGGGTTTTGGCAGAGATTTTTTGTAACTATGGCTGGCGAATTGGATTTCGGAGCCGAAGATAAGACTCCCAAGTTTGGAGTCTCCATGGCACTAAGACCCTAA 3918 0.4477 MNTMTTPFQQGPPQTVRRLAVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNESLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSGRGEEALVYYTLEKKSVFSWVRGEIGLKIYYYDEMLQQEEQQQQQQEQQPPPEEERHGGGNEQERNRPPMMVEEGRVFQVSEQMEHCVPLPDGPPSPRVVVMEESPSPVVRVQQDPPLPEMYGPREPEMQYHHQPEVRKMQAMRNDRVKIMKRPNGGGDYAPKDISGKKPNGESDRIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTSSHYVRSKPASYRPNEPNDSPEWNQVFALGYNKTDATGATLEISVWDSPAEQFLGGVCFDLSDVPIRDSPDSPLAPQWYRLEGGAAEQNSGRVSGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVVVMEAQDLNLTPNLPPLTAPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWHEDLLFVAGEPLEDSMVLLVEDRTTKEAALLGHVVIPLTSIEQRIDDRHVPAKWFPLEGGTYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMKSKGPGKGSTDAYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSEERPDCRIGKIRIRVSTLESNKIYTSSYPLLVLTRTGLKKMGEIELAVRFACPSFMPDTCAVYGQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLSWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDLVRIRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCFVVAIILYSVPPKMVAVALGFYYLRHPMFRNPMPPASLNFFRRLPSLSDRVRKKGQALAVWILKKLLSLITVTFIVSVRSEKGCEKVGPGIFSNLGDKAKDVLYKDYAEQSPIHFHYKFMDWNAGFACKVVEIVPGVRTVFKCNIPDSGKVELQYLNKFAGITGRIGLLGNEGGAYDPVVNFSGLLGTRIVSLGANVALHIPTRSITKLNAGFGFNSAFLEASLTFHDSFDTLKATFYHEVNPLTQTAIATQVKHSLSLQETGVTIGVQHAFFPQTLLKARFDSAGKAGALIQQGFWQRFFVTMAGELDFGAEDKTPKFGVSMALRP 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03660 1305 ProSiteProfiles C2 domain profile. 443 571 IPR000008 -
Tsu04g03660 1305 Gene3D C2 domain 14 179 IPR035892 -
Tsu04g03660 1305 Pfam Eukaryotic porin 1116 1298 IPR027246 GO:0005741|GO:0055085
Tsu04g03660 1305 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 463 609 IPR035892 -
Tsu04g03660 1305 Gene3D Porin 1065 1304 IPR023614 -
Tsu04g03660 1305 MobiDBLite consensus disorder prediction 153 185 - -
Tsu04g03660 1305 CDD C2D_MCTP_PRT_plant 619 746 - -
Tsu04g03660 1305 CDD Porin3_VDAC 1067 1304 IPR001925 GO:0005741|GO:0008308|GO:0098656
Tsu04g03660 1305 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 303 448 IPR035892 -
Tsu04g03660 1305 Gene3D C2 domain 602 750 IPR035892 -
Tsu04g03660 1305 Gene3D C2 domain 449 588 IPR035892 -
Tsu04g03660 1305 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 18 165 IPR035892 -
Tsu04g03660 1305 CDD C2C_MCTP_PRT_plant 464 607 - -
Tsu04g03660 1305 SMART C2_3c 464 566 IPR000008 -
Tsu04g03660 1305 SMART C2_3c 18 123 IPR000008 -
Tsu04g03660 1305 SMART C2_3c 303 400 IPR000008 -
Tsu04g03660 1305 SMART C2_3c 619 726 IPR000008 -
Tsu04g03660 1305 ProSiteProfiles C2 domain profile. 285 406 IPR000008 -
Tsu04g03660 1305 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Tsu04g03660 1305 Pfam Plant phosphoribosyltransferase C-terminal 875 1029 IPR013583 -
Tsu04g03660 1305 Pfam C2 domain 618 729 IPR000008 -
Tsu04g03660 1305 Pfam C2 domain 463 573 IPR000008 -
Tsu04g03660 1305 Pfam C2 domain 303 407 IPR000008 -
Tsu04g03660 1305 Pfam C2 domain 18 110 IPR000008 -
Tsu04g03660 1305 PANTHER BNAA10G16860D PROTEIN 14 1029 - -
Tsu04g03660 1305 MobiDBLite consensus disorder prediction 165 185 - -
Tsu04g03660 1305 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 618 770 IPR035892 -
Tsu04g03660 1305 ProSiteProfiles C2 domain profile. 601 727 IPR000008 -
Tsu04g03660 1305 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 14 1029 - -
Tsu04g03660 1305 CDD C2B_MCTP_PRT_plant 303 432 - -
Tsu04g03660 1305 Gene3D C2 domain 297 430 IPR035892 -
Tsu04g03660 1305 CDD C2A_MCTP_PRT_plant 18 148 - -
Tsu04g03660 1305 MobiDBLite consensus disorder prediction 266 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03660 Tsu-Chr4 45650352 45658130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03660 5 1029 Lipid Metabolism Gene Families AT1G74720 70.018 0.0 1555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03660 - - gmx:100783882 1760.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00104 04 1007529 1011141 Tsu04g03660 04 45650352 45658130 ECH
Tsu06g02037 06 25215266 25219362 Tsu04g03660 04 45650352 45658130 ECH
Tsu08g01852 08 22702615 22705440 Tsu04g03660 04 45650352 45658130 ECH
Tsu04g03660 04 45650352 45658130 Tsu04g03660 04 45650352 45658130 ECH