Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00104 ATGGCTAAGGGTCCCGGTCTCTACACTGACATCGGCAAGAAAGCCAGAGATCTGTTGTACAAGGATTATCACAGTGACCAGAAATTCACCATCACCACTTACTCACCTACTGGAGTTGCTATAACATCAACTGGAACAAAGAAAGGTGAACTCTTTCTTGGTGATGTTAATACCCAGTTGAAGAACAAAAACATCACTGCTGATGTCAAAGTTGACACAAATTCTAATCTTTTCACAACTGTCACTATCAATGAACCTGCTCCTGGTGTGAAGGCTATTTTAAGTTTCAGAGTTCCTGAGCAAACATCTGGCAAGGTGGAGCTACAATACTTGCATGAGTATGCTGGAATAAGCAGCAGCGTTGGATTGAAAGCAAATCCAGTTGTCAACTTTTCTAGTGTTTTTGGAACTGATCGTGGTTCTCTTGGTGCTGATCTTTCTTTTGACACCAAACTTGGGGAGCTAACAAAATCTAATGTTGGACTGAGCTTTATCAATGCCGACTTGCTTGCGGCATTGACTCTGAATGACAAAGGTGATGTGCTGAATGCGTCTTACTATCATGCTATTAACCCCTTGACCAACACTGCTGTTGCTGTTGACATGAGTCACAAATTCTCAACTAAAGAGAACACTTTCACACTTGGTGCCCAGCATGCTTTGGATCCATTGACCACAGTGAAGGCTCGCGTCACCAACGCTGGCAAGGCAAGTGCTCTTATCCAGCACGAATGGCGTCCCAAATCACTCTTTAccatttctactgaggtagacACCAAGGCCATTGAAAAGAGTGCTAAGGTTGGATTGAGTTTGGCTCTCAAACCCTGA 831 0.426 MAKGPGLYTDIGKKARDLLYKDYHSDQKFTITTYSPTGVAITSTGTKKGELFLGDVNTQLKNKNITADVKVDTNSNLFTTVTINEPAPGVKAILSFRVPEQTSGKVELQYLHEYAGISSSVGLKANPVVNFSSVFGTDRGSLGADLSFDTKLGELTKSNVGLSFINADLLAALTLNDKGDVLNASYYHAINPLTNTAVAVDMSHKFSTKENTFTLGAQHALDPLTTVKARVTNAGKASALIQHEWRPKSLFTISTEVDTKAIEKSAKVGLSLALKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00104 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Tsu04g00104 276 Gene3D Porin 1 275 IPR023614 -
Tsu04g00104 276 PANTHER MITOCHONDRIAL OUTER MEMBRANE PROTEIN PORIN 3 1 276 - -
Tsu04g00104 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Tsu04g00104 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Tsu04g00104 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00104 Tsu-Chr4 1007529 1011141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00104 K15040 - gmx:100170728 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00104 04 1007529 1011141 Tsu04g03660 04 45650352 45658130 ECH
Tsu04g00104 04 1007529 1011141 Tsu04g00104 04 1007529 1011141 ECH
Tsu04g00104 04 1007529 1011141 Tsu06g02037 06 25215266 25219362 ECH
Tsu08g01852 08 22702615 22705440 Tsu04g00104 04 1007529 1011141 ECH