Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03608 ATGGAGTATCAAAGATCCTTTAGCAATGACTCTAGTAACCTTCGGAATGAGTTAACTACTAGACGTACTCTTTCTTCGCAACACAGTCTCGCATCAGTTCCTTCCCTTAACTCATCAAACTCGCAACAGTTTCATAATTCTTCCTTCACATGTCTCACAACACTCAAACTCCAAACTTACATATCCTCTTTAACCCTTGCAGGAAAATTCCTCTACACTGGTTCATCCAACAAAGAAATCACATCATGGAACCTTTCCAATTTTCATTCACACCCTCAAGAATCAATTACTAACACATTAGAATCCGGAAACGGTGCTGTGAAATCGATACTTGTTCAATCGGACAAGCTTTTCACAGCTCACCAAGACAACAGAATCCGCGTTTGGAAAATCACTATTAACGCTAACAAtgaatatcaacaacaaaagttCACTCATTTAGCCACACTCCCAACATTCATTGACCGTTTCTCAAAAGTCTTGATCCCCAAAAACCATGTTAAAATTCGGAGGCACAAAAAATGCACATGGGTTCACCATGTTGATACAGTCTCTTCCCTTGCCTTATCCAAAGACGGAACCTTGTTGTATTCCGTTTCGTGGGACAGAACAATCAAGGTTTGGAAAACTAATGACTTCACATGTTTAGAATCAGTTCACAATGCGCACGACGATGCAATAAACGCAATTGCAGTTTCTAATGATGGATATGTTTACACTGGATCAgcagataaaaaaattaaggtttgGAAGAAAGAAAACGGCGAGAAGAAACATTCATTGGTTGGTACATTGGAGAAACATAAGTCTGGTATTAATGCATTGGCTCTTAACGATGATGGTTCTGTTTTATATTCCGGTGCATGTGATAGATCAATATTGGTATCTGAGAAAGATGAAAATGGTAACTTGGTTGTGATAGGTGCTCTTCGCGGTCACACAAAGTCTATATTGTGTTTGGCTGTTGTTTCTGATTTGGTTTGCAGTGGTTCTGAGGATAAGACAATTCGAATTTGGAGAGGTAATAATGAAAATGTTGTTAGAGAGTATTATTGTTTGAGTGTTTTAGAAGGGCATAAAGGTCCAATTAAGTGCCTAACTGCTGTCCTTGATCATTTTCATGACCAATcatcagaaacatcttttcttATCTATAGTGGTAGTTTGGACTGTGATATTAAGGTTTGGCAGATTTTCGTTCCTCTTTTATAA 1212 0.3663 MEYQRSFSNDSSNLRNELTTRRTLSSQHSLASVPSLNSSNSQQFHNSSFTCLTTLKLQTYISSLTLAGKFLYTGSSNKEITSWNLSNFHSHPQESITNTLESGNGAVKSILVQSDKLFTAHQDNRIRVWKITINANNEYQQQKFTHLATLPTFIDRFSKVLIPKNHVKIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTNDFTCLESVHNAHDDAINAIAVSNDGYVYTGSADKKIKVWKKENGEKKHSLVGTLEKHKSGINALALNDDGSVLYSGACDRSILVSEKDENGNLVVIGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGNNENVVREYYCLSVLEGHKGPIKCLTAVLDHFHDQSSETSFLIYSGSLDCDIKVWQIFVPLL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 256 - -
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 349 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 303 340 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 349 397 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 212 251 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 258 297 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 48 84 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 170 209 IPR001680 GO:0005515
Tsu04g03608 403 SMART WD40_4 93 130 IPR001680 GO:0005515
Tsu04g03608 403 MobiDBLite consensus disorder prediction 1 42 - -
Tsu04g03608 403 Pfam WD domain, G-beta repeat 261 294 IPR001680 GO:0005515
Tsu04g03608 403 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Tsu04g03608 403 Pfam WD domain, G-beta repeat 352 396 IPR001680 GO:0005515
Tsu04g03608 403 Pfam WD domain, G-beta repeat 221 251 IPR001680 GO:0005515
Tsu04g03608 403 Pfam WD domain, G-beta repeat 308 339 IPR001680 GO:0005515
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Tsu04g03608 403 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Tsu04g03608 403 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Tsu04g03608 403 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Tsu04g03608 403 SUPERFAMILY WD40 repeat-like 66 398 IPR036322 GO:0005515
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Tsu04g03608 403 CDD WD40 68 397 - -
Tsu04g03608 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 403 IPR045182 -
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 339 - -
Tsu04g03608 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Tsu04g03608 403 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 403 - -
Tsu04g03608 403 Gene3D - 37 154 IPR015943 GO:0005515
Tsu04g03608 403 Gene3D - 166 400 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03608 Tsu-Chr4 45160966 45162510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03608 170 398 Miscellaneous Gene Families AT5G08390 24.034 8.38e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03608 - - gmx:100801906 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03608 04 45160966 45162510 Tsu03g02213 03 24066328 24067557 ECH
Tsu04g03608 04 45160966 45162510 Tsu04g03608 04 45160966 45162510 ECH
Tsu04g03608 04 45160966 45162510 Tsu03g02213 03 24066328 24067557 PCT