Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02213 ATGGAATATCACTATGACAGTGGCTCTTCCTCATCTCATTCCAACCACTACCTTCAACAAACTGGGTCAACGCCCTTCACTTCACAGCGCAGTCTCCTCTCAGTTCCTTCCCTCAACAACactcaccaccaccaccaccaccacaattaCCACCTCATCACAACCCTCAAAAACCACCATAACACATCCTACACATCCTCTCTTACCCTATTTGGCAAATTCCTCCTAACTGGTTCATCAGACAGAGAAATCACAACCTGGAACAGAACAACCTCTgaagaacaagaacaacaaaacTCAACAAACAACATAGTAATTGCAGGAAAAGGTGCTGTTAAATCTTTAGTAATTCAATCAAACACAAACACCCTTTTCAGTGCTCATCAAGATCACAAAATCCGTGTTTGGAAATTAACAAATGATCAAAAGAAATACACTCATTTAGCAACACTTCCTACACTTGGTGACCGTGCTTCCAAAATCTTAATCCCAAAAAACCATGTTCAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCATGTTGACACTGTTTCTTCACTTGCTCTATCTAAAGATGGAAACTTGTTATACTCTGTTTCATGGGACAGAACAATCAAAATCTGGAGAACTAAAGATTTCACTTGTTTAGAATCAATAACAAACGCACACGACGATGCCATTAACGCAGTTGTAGTTTCTTATGATGGTGTTGTTTACAGTGGATCAGCAGATAAAAGAATCAAAGTTtggaagaaacaaaaacaaaaacattctCTTGTATCAACCTTGGAGAAACATAACTCTGGAATCAATGCTTTGGTTTTAAGCAGTGATGAAACTATTCTATATTCTGGTGCTTGTGATAGATCAATATTGGTTTGGGAGAAAGAagttaatgatgatgaagatgaagaagaagataatgATGGAAGAATGATTCTAATGGGTGCTTTAAGAGGACACAAAAGTTCAATATTATGTTTAGCTGTTGTTTGGGATTTGGTATGTAGTGGTTCAGCTGATAAAACCATAAGAATTTGGAGAGGTGTTGGAAgagattatttttgtttgtctgTTTTGGAAGGACATCAAGGTTCAATTAAGTGCTTAACTGCAGTGGTTGAAAATTGTGATACTTCTGAATCAGAAGATGCATCTTTTTTAGTCTATAGTGGTAGTTTGGATTGTGACATTAAAGTTTGGCAGATTTTTGTTCCTGCTGAGTGA 1230 0.3374 MEYHYDSGSSSSHSNHYLQQTGSTPFTSQRSLLSVPSLNNTHHHHHHHNYHLITTLKNHHNTSYTSSLTLFGKFLLTGSSDREITTWNRTTSEEQEQQNSTNNIVIAGKGAVKSLVIQSNTNTLFSAHQDHKIRVWKLTNDQKKYTHLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGNLLYSVSWDRTIKIWRTKDFTCLESITNAHDDAINAVVVSYDGVVYSGSADKRIKVWKKQKQKHSLVSTLEKHNSGINALVLSSDETILYSGACDRSILVWEKEVNDDEDEEEDNDGRMILMGALRGHKSSILCLAVVWDLVCSGSADKTIRIWRGVGRDYFCLSVLEGHQGSIKCLTAVVENCDTSESEDASFLVYSGSLDCDIKVWQIFVPAE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02213 409 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 9 407 - -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 296 IPR001680 GO:0005515
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 209 - -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Tsu03g02213 409 CDD WD40 52 403 - -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Tsu03g02213 409 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 407 IPR045182 -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Tsu03g02213 409 SUPERFAMILY WD40 repeat-like 48 404 IPR036322 GO:0005515
Tsu03g02213 409 SMART WD40_4 312 349 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 213 252 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 257 296 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 171 210 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 49 88 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 98 137 IPR001680 GO:0005515
Tsu03g02213 409 SMART WD40_4 354 403 IPR001680 GO:0005515
Tsu03g02213 409 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Tsu03g02213 409 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Tsu03g02213 409 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Tsu03g02213 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Tsu03g02213 409 Gene3D - 166 406 IPR015943 GO:0005515
Tsu03g02213 409 Gene3D - 45 162 IPR015943 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 112 137 IPR001680 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 179 209 IPR001680 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 317 348 IPR001680 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 357 402 IPR001680 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Tsu03g02213 409 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Tsu03g02213 409 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02213 Tsu-Chr3 24066328 24067557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02213 120 403 Acyl Lipid Metabolism Gene Families AT3G18860 25.784 2.67e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02213 - - gmx:100777242 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03608 04 45160966 45162510 Tsu03g02213 03 24066328 24067557 ECH
Tsu03g02213 03 24066328 24067557 Tsu03g02213 03 24066328 24067557 ECH
Tsu04g03608 04 45160966 45162510 Tsu03g02213 03 24066328 24067557 PCT