Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03410 ATGGTGAATCTTGTAGCAGCACAAAAACCATTGATACATGGCCTAATGAAAATGGCAGGTATAAGACCCTACACAATAGAGTTAGATTTAGGAACAACAATGAGTTTTTGGGTACCATCAGAAACCATAACAAAGcctaagaaaaaagaagaaaaacctcAAATAATCGCAAAGCCGAATAAACCCGTGGTTGTTTTAGTCCATGGTTTTGCCGGGGAAGGAATAGTGACGTGGCAATTTCAAGTTGGCGcgttaacaaaaaaatactcTGTCTATATTCCGGATCTTCTATTCTTCGGAGGATCCACTACAGACAAATCCGAACGGTCTCCGAAATTTCAAGCAGAGTGTTTGGTGACAGCATTGAGGAAACTTGGTGTTGAAAAATGTATCATTGTTGGTTTTAGTTATGGTGGAATGGTGGCGTTTAAAATGGCCGAAATGTATCCTGAATTTGTTCAAGCTATGGTTATATCAGGATCTATTTTGGCTATGACAGATTCAATTAGTGTTAGTTCATTGCAAGAACTtggattttcttcttcttctgagcTTTTGTTGCCTAATTCAGTTAAGGGTCTTAAGGCACTATTGTCTGTTGCTGCTTATAAGAAACTTTGGTTCCCTGATCGTTTACATAAAGACTTTCTTGAGGTGATGTTCACGAATAGAAAGGAACGAGGTGAGCTACTAGAAGGCttagtaattagtaataaaGACATCCACGTTCCAAGTTTTCCACAGAGGATACATCTTCTATGGGGTGAAAATgatcaaattttcaaattggaACTTGCTCAAAATATGAAAGAGCAATTAGGAGATGACACGACGTTTGAAGGCATAAAGAAAGCTGGACACCTTGTTCACTTGGAGCGACCATGTGTCTATAATAGATGCCTCAAAAAGTTTATTGATTCATTCTTGGCTTCAAATGAAGccatatattaa 951 0.346 MVNLVAAQKPLIHGLMKMAGIRPYTIELDLGTTMSFWVPSETITKPKKKEEKPQIIAKPNKPVVVLVHGFAGEGIVTWQFQVGALTKKYSVYIPDLLFFGGSTTDKSERSPKFQAECLVTALRKLGVEKCIIVGFSYGGMVAFKMAEMYPEFVQAMVISGSILAMTDSISVSSLQELGFSSSSELLLPNSVKGLKALLSVAAYKKLWFPDRLHKDFLEVMFTNRKERGELLEGLVISNKDIHVPSFPQRIHLLWGENDQIFKLELAQNMKEQLGDDTTFEGIKKAGHLVHLERPCVYNRCLKKFIDSFLASNEAIY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03410 316 PANTHER SI:DKEY-122A22.2 2 308 - -
Tsu04g03410 316 SUPERFAMILY alpha/beta-Hydrolases 59 306 IPR029058 -
Tsu04g03410 316 PRINTS Alpha/beta hydrolase fold signature 88 103 IPR000073 -
Tsu04g03410 316 PRINTS Alpha/beta hydrolase fold signature 132 145 IPR000073 -
Tsu04g03410 316 PRINTS Alpha/beta hydrolase fold signature 146 159 IPR000073 -
Tsu04g03410 316 PRINTS Alpha/beta hydrolase fold signature 250 264 IPR000073 -
Tsu04g03410 316 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 2 308 - -
Tsu04g03410 316 Pfam alpha/beta hydrolase fold 62 175 IPR000073 -
Tsu04g03410 316 PRINTS Epoxide hydrolase signature 282 304 IPR000639 GO:0003824
Tsu04g03410 316 PRINTS Epoxide hydrolase signature 132 145 IPR000639 GO:0003824
Tsu04g03410 316 PRINTS Epoxide hydrolase signature 88 103 IPR000639 GO:0003824
Tsu04g03410 316 PRINTS Epoxide hydrolase signature 146 159 IPR000639 GO:0003824
Tsu04g03410 316 Gene3D alpha/beta hydrolase 11 308 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03410 Tsu-Chr4 43311945 43323616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03410 62 157 Acyl Lipid Metabolism Gene Families AT4G02340 31.313 3.42e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03410 - - gmx:100816070 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00747 05 6309668 6311940 Tsu04g03410 04 43311945 43323616 ECH
Tsu04g03410 04 43311945 43323616 Tsu04g03410 04 43311945 43323616 ECH
Tsu05g00747 05 6309668 6311940 Tsu04g03410 04 43311945 43323616 PCT