Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03376 ATGAAAATCGATCAAGGTGACAAAGAAAACGAAACAACCACGTTGAATAAATATGCTTTTGCTTGTGCCATAGTCGCTTCAATGGTATCCATCGTTTCTGGTTATGATACCGGTGTTATGAGTGGAGCAATGGTGTTCATAAAAGATGAAATGGGAATCAGCGACACACAACAAGAGGTTCTAGCAGGAATCTTAAATCTATGTGCATTGGTAGGATCCTTAACAGCAGGAAGAACATCTGATTACATTGGTCGTCGTTACACAATCTTCTTATCCTCTATACTCTTCATTATTGGTGCAGTTTTAATGGGATATGGTCCAAACTATGCAATTTTAATGGTTGGAAGATGTGTTTGTGGTATTGGTGTTGGTTTTGCTCTTATGATAGCGCCAGTTTACTCTGCTGAAATTTCCTCTGCATCATCAAGAGGTTTTCTAACTTCTTTACCTGAGCTTTGTATTGGTATTGGAATCTTATTAGgctatatttcaaattatattttgggGAAATATTTGAGTTTGAAACTTGGTTGGAGATTAATGCTTGGTATTGCTGCTTTTCCTTCACTTGTATtagcttttggtattttaatgaTGCCAGAGTCACCAAGGTGGTTAGTTATGCAAGGTCAATTAGGGAAAGCCAAAAAAGTTTTATTACAAGTTTCAAATACAACGCACGAAGCGGAGCTTCGTTTCAAGGATATCAAAATTGCAGCGGGTATAGATGAAAATTGTAATGACGATATTGTTGAATTACCTGAAAAGTTTCACCAAGGCGAAGCGGTTTGGAAAGAGTTGATTTTAAGACCAACTCCTTCTGTACGTTGGATGTTATTTGCTGCAATTGGAATTCATTTTTTCGAACATGCAACTGGAATTGAAGCTGTTATGTTATATAGTCCAAGAATTTTCAAGAAAGCTGGTGTTACAAGTAAAGAAAAGCGTTTACTTGCGACCGTTGGAGTTGGATTAACAAAgatatttttccttttaattgCTTTGTTTTCGCTTGATAAAGTTGGTAGAAGAAGATTATTGCAAATTAGTGTCGGAGGAATGATTATTGGACTTACGATATTGGGCTTTAGTTTGACTATGGTCGATCAATCCAATGAAAAAGTCTCGTGGGCCTTGACGCTTAGTATTGTGGCAACTTATGTCTATGTTGCTTTCTTTAATCTTGGGCTTGGGCCTGTTACTTGGGTTTATAGTTCAGAAATATTTCCTTTGAAGTTAAGAGCACAAGGAGCTAGTATAGGAGTTGCGGTGAATCGAACTATGAATGCGGTTGTTTCCATGACTTTTATTTCGATCTATAAAGCAATCACTATAGGTGGAAGCTTTTTCATGTTTGCTGGTATATCTGTAATAGCTTggatttttttctatttttttcttcctgaAACTAAAGGTAAGGCTTTGGAGGAGATGGAGATGGTTTTTACCAAAAAACCAAGTAGTAAAGATGTAGAAATGAAAACTGATCCAATACATAATGTCTAG 1506 0.3493 MKIDQGDKENETTTLNKYAFACAIVASMVSIVSGYDTGVMSGAMVFIKDEMGISDTQQEVLAGILNLCALVGSLTAGRTSDYIGRRYTIFLSSILFIIGAVLMGYGPNYAILMVGRCVCGIGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYISNYILGKYLSLKLGWRLMLGIAAFPSLVLAFGILMMPESPRWLVMQGQLGKAKKVLLQVSNTTHEAELRFKDIKIAAGIDENCNDDIVELPEKFHQGEAVWKELILRPTPSVRWMLFAAIGIHFFEHATGIEAVMLYSPRIFKKAGVTSKEKRLLATVGVGLTKIFFLLIALFSLDKVGRRRLLQISVGGMIIGLTILGFSLTMVDQSNEKVSWALTLSIVATYVYVAFFNLGLGPVTWVYSSEIFPLKLRAQGASIGVAVNRTMNAVVSMTFISIYKAITIGGSFFMFAGISVIAWIFFYFFLPETKGKALEEMEMVFTKKPSSKDVEMKTDPIHNV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03376 501 ProSiteProfiles Major facilitator superfamily (MFS) profile. 22 471 IPR020846 GO:0022857
Tsu04g03376 501 PANTHER POLYOL TRANSPORTER 3-RELATED 11 492 - -
Tsu04g03376 501 SUPERFAMILY MFS general substrate transporter 6 479 IPR036259 -
Tsu04g03376 501 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 PRINTS Sugar transporter signature 383 404 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 PRINTS Sugar transporter signature 30 40 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 PRINTS Sugar transporter signature 113 132 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 PRINTS Sugar transporter signature 406 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 ProSitePatterns Sugar transport proteins signature 1. 76 93 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu04g03376 501 Gene3D MFS general substrate transporter like domains 11 486 IPR036259 -
Tsu04g03376 501 ProSitePatterns Sugar transport proteins signature 2. 118 143 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu04g03376 501 ProSitePatterns Sugar transport proteins signature 1. 334 350 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu04g03376 501 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 11 492 IPR045262 GO:0015144
Tsu04g03376 501 TIGRFAM SP: MFS transporter, sugar porter (SP) family 16 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu04g03376 501 Pfam Sugar (and other) transporter 22 482 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03376 Tsu-Chr4 42937808 42940135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03376 4 484 Organic Solute Cotransporters AT4G36670 66.736 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03376 - - var:108328789 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00724 05 6122779 6126033 Tsu04g03376 04 42937808 42940135 ECH
Tsu04g03376 04 42937808 42940135 Tsu04g03376 04 42937808 42940135 ECH