Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03053 ATGGCAAAGGATCGAAGTTCTGTATTTAGCTTTCAAAAATGTTGTTACGTTGTCACCATTTCTTCCATTTGCTCTATCATCTTATTCCTTTCTTGGACTCATTGTTGCAGCCAATGCTATCCACCTTTTCCTTACCAAACAACACTACAAAATCAAACTCAATTAATCAATCTCCTTTCATATCCCTTAGCATGGAACAATCTAATCTTTCCATCAAACCCACCTCCAAAATTCCTCAAGATTGCACTTTTTGTCAAGAAATGGCCACAGAGATCTCATGCAGGTGGACTTGAACGTCATGCTTTAACACTTCATCTTGCCCTTGCCAAAAGAGGCCATGAACTTCACATATTCACCACTTCAACCACCCTGTCTTTCTCAGACCATTCAATCATCGACAATTTACATTTTCACTTCTCAAAACCATCACCGGCTGGTTACCTTGACCAAGCCATTGTTTGGGAGCAATTTCAACTACAAAACTCAACCATTAGACCATTTGACATTGTTCACACCGAAAGTGTTGGCCTTAGGTACACACGATCTCGACATGTCACAAATTTGGCTGTCACATGGCATGGAATTGCATACGAGACTATTCACTCCGACATCATTCAAGAACTTCTAAGACCTCCCCAAGAATCACAAACAAATGCaatgaaagaaagaacaatAAAAGTTGTTGAAGAGATCAAGTTCTTCACAAATTACGCTCATCATGTCGCGACAAGTGATCATGCCGGTGATATCCTAAAGCGGGTCTACATGATTCCAGAAGAAAGGGTTCATATTATTCTCAACGGTGTTGATCAACAAGTTTTCAAGCCAGATATTTCCAAAGGAAATGAATTCAAGAAAAAACATGGAGTTCCAGATTCTAAGTCATTGGTGATAGGACTAGCAGGGAGGTTAGTGAAAGACAAGGGACACCCTTTAATGTTTGAAGCCTTAAAGCAAATAAATGAAGAAAACAACACTTTTTTAGAGAATAGTATGATTCTGGTAGCTGGAGATGGACCTTGGGCTGCAAGATATAGAGAACTTGGGTCAAATGTATTGGTTTTAGGACCCCTTGAACAAGGTGAACTTGCTTCATTCTATAATGCTATTGATATTTTTGTTAACCCTACTTTAAGAGCACAAGGTTTGGATCACACTCTTCTAGAAGCTATATTGAGTGGTAAGCCAGTAATGGCAACTAAACTTGCAAGCATTGTAGGGTCTGTAATTGTTGGCAATGAAATGGGTTACACATTTTCTCCAACAGTGATTTCTCTTAAGAAAGCCTTATATGAGTCATGGGTTGGTGGCAGGGAAATTCTAAATAAGAAAGGTCAAGTTTCTAGGGAAAGAGGTTTGCAATTGTTCACTGCTACTAAGATGGTGGCTGCTTATGAGAGGCTTTTTCTTTGCATATCTAGTTTAGATCATGAGGATAATTTCTGTGAATACCATCCATTAGGTAATTAA 1470 0.385 MAKDRSSVFSFQKCCYVVTISSICSIILFLSWTHCCSQCYPPFPYQTTLQNQTQLINLLSYPLAWNNLIFPSNPPPKFLKIALFVKKWPQRSHAGGLERHALTLHLALAKRGHELHIFTTSTTLSFSDHSIIDNLHFHFSKPSPAGYLDQAIVWEQFQLQNSTIRPFDIVHTESVGLRYTRSRHVTNLAVTWHGIAYETIHSDIIQELLRPPQESQTNAMKERTIKVVEEIKFFTNYAHHVATSDHAGDILKRVYMIPEERVHIILNGVDQQVFKPDISKGNEFKKKHGVPDSKSLVIGLAGRLVKDKGHPLMFEALKQINEENNTFLENSMILVAGDGPWAARYRELGSNVLVLGPLEQGELASFYNAIDIFVNPTLRAQGLDHTLLEAILSGKPVMATKLASIVGSVIVGNEMGYTFSPTVISLKKALYESWVGGREILNKKGQVSRERGLQLFTATKMVAAYERLFLCISSLDHEDNFCEYHPLGN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03053 489 Gene3D Glycogen Phosphorylase B; 294 449 - -
Tsu04g03053 489 CDD GT4_PimA-like 80 469 - -
Tsu04g03053 489 PANTHER GLYCOSYLTRANSFERASE FAMILY 4 PROTEIN 1 485 - -
Tsu04g03053 489 Pfam Glycosyltransferase Family 4 94 271 IPR028098 -
Tsu04g03053 489 Pfam Glycosyl transferases group 1 297 420 - -
Tsu04g03053 489 PANTHER GLYCOSYLTRANSFERASE 1 485 - -
Tsu04g03053 489 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 80 469 - -
Tsu04g03053 489 Gene3D Glycogen Phosphorylase B; 78 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03053 Tsu-Chr4 37772750 37774219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03053 57 484 Glycosyltransferase AT4G19460 46.501 6.22e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03053 - - gmx:100797831 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03053 04 37772750 37774219 Tsu04g03053 04 37772750 37774219 ECH
Tsu05g01080 05 9478560 9480017 Tsu04g03053 04 37772750 37774219 PCT