Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02638 ATGCCAGGTATTGTTacaattgaaggaaaaaaaatgaatgagtTTGAGAATACTCCTTCTCCATCTAAgaaaatcttaaatcaaaccaATTCACCAAGAATACCTTTTAGTCCACAAAGTGTCGAGAGGCGTGACGTAAAAAGTTTTCATGGTCGATCACGCTCGAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTATAAGTGATTCAGATTTTAGCTATCTTGATGAAGTAAAATTGAGGAATGCGGATTTTGAAATGGATTCTAGCAGTGGAACACCAACAAAGACAGGTTTGGAGAAGGATTCTAGCAGTGGAACACCAACAAAATCAAGAGCTAAGGGAAAAATTTCTCATACAAAACCTCCTATTGAAAAGAAGAATGACaacaataatttgagaaaacaaaatacaacagTTACAACTCGTGCGACGAAACCTAAGAGTGGTTCTATTGTAAGATCAAGGTCACAAAGCCGAGTTGAGAATTCCAAAGAATCACCAATATTTGATAATCCTGAGCTAGGAccatttttactaaaacaagCGAGGGACTTGATTTCGTTAGGAGAGAATCCACAGAAAGCGCTCGAATATTCCCTTCAAGCGATGAAAATGTTTGAGAAATCTGCAAATGGGAAACCGAGTTTGGATTTGGTAATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGGGATTACAATGAGGCAATTCCAATTCTAGAGCGATCCGTCGAGATTCCTATAGTCGAGGAAGGCCAACAACACGCCATTGCTAAATTCGCAAGTCACATGCAGCTTGGAGACACATATGCCATGTTAGGCCAGCTTGAGAACTCAATTATGTGTTACAATAAAGGGTTGGAAGTACAAAGACTGGTTTTGGGAGCAACAGACCCAAGAGTTGGTGAAACTTGTAGATATGTTGCAGAAGCTAATTTTCAAGCAATGCAATTTGATGAGGCAGAAAGGTTGTGCCAAATGGCTCTTGATATTCACAGAGAAAATGGTTCACCTTGTTCTCTTGAAGAGGCGGCGGATAGAAGGTTAATGGGACTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAGAACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAGGTTGAAGTAGCGTCCGTTGATTGCAGCATTGGAGACACATTCCTATCGTTGGCTCGATACGATGAGGCCATCTTGGCATATAAAAAGGCGTTAGCAGTTTTCAAGACTCACAAAGGAGAGAATCATCCTGCAGTTGGATCGGTTTATGTACGCTTGGCTGAGTTGTATACTAGGACATGGAAAATAAAGGAATCAAAATCATATTGCAAAGATGCACTAAAAATCTATGAAAATCCCATGTCTGGTGTCCCTTCTGATGAGATTGCTAATGGTTTTGTGAACGTTGCAGCTATTTACGAGTCTATGAATGAGTATGAACAAGCACTCAAGTTACTACATAAGGCACTAGAGATACATAATGATGCTCCTAGTCAACAGAACACAATAGCAGGAATTGAAGCTCAAATGGGGGTTATATACTATGTATTGGATAACCAAACTGAATCTTACAATGCTTTTAAGAATGCTATCTCAAAACTTCGTGCTACCGGAGAGAAAAAATCCGCTTACTTTGGTATTGTTCTTAATCAAATGGGTCTTTGTTGTGTGCAACTCTGCGAGTTAACCGAGGCTGCAAAATTATTTGAAGAAGCCAAGATTGTTTTGGAACAAGAATATGGTCCCTATCACCCTGAAACTATTGGAGTATATAGCAATCTGGCCGGCACATATGATGCACTTGGAAGGGTAGATGATGCAGTTGATATTATGGAGTACATTGTTGTTGTGAGGGAGGAAAAACTTGGGACAGCACActttgatgttgttgatgagaAGAGAAGGTTGGATCAGTTGTTGAAGGAAACAGGTAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGATCCTTCTAGATGTTTTTGAtgattaa 2019 0.3779 MPGIVTIEGKKMNEFENTPSPSKKILNQTNSPRIPFSPQSVERRDVKSFHGRSRSSQSFGSDSDWSISDSDFSYLDEVKLRNADFEMDSSSGTPTKTGLEKDSSSGTPTKSRAKGKISHTKPPIEKKNDNNNLRKQNTTVTTRATKPKSGSIVRSRSQSRVENSKESPIFDNPELGPFLLKQARDLISLGENPQKALEYSLQAMKMFEKSANGKPSLDLVMCLHVTAAIYCSLGDYNEAIPILERSVEIPIVEEGQQHAIAKFASHMQLGDTYAMLGQLENSIMCYNKGLEVQRLVLGATDPRVGETCRYVAEANFQAMQFDEAERLCQMALDIHRENGSPCSLEEAADRRLMGLICETNGNHEAALENLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGENHPAVGSVYVRLAELYTRTWKIKESKSYCKDALKIYENPMSGVPSDEIANGFVNVAAIYESMNEYEQALKLLHKALEIHNDAPSQQNTIAGIEAQMGVIYYVLDNQTESYNAFKNAISKLRATGEKKSAYFGIVLNQMGLCCVQLCELTEAAKLFEEAKIVLEQEYGPYHPETIGVYSNLAGTYDALGRVDDAVDIMEYIVVVREEKLGTAHFDVVDEKRRLDQLLKETGRVRNRKTKSLEILLDVFDD 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02638 672 Gene3D Tetratricopeptide repeat domain 170 264 IPR011990 GO:0005515
Tsu04g02638 672 Gene3D Tetratricopeptide repeat domain 549 604 IPR011990 GO:0005515
Tsu04g02638 672 MobiDBLite consensus disorder prediction 13 37 - -
Tsu04g02638 672 PANTHER KINESIN LIGHT CHAIN 1 671 - -
Tsu04g02638 672 MobiDBLite consensus disorder prediction 82 168 - -
Tsu04g02638 672 MobiDBLite consensus disorder prediction 1 69 - -
Tsu04g02638 672 MobiDBLite consensus disorder prediction 86 113 - -
Tsu04g02638 672 SUPERFAMILY TPR-like 201 629 IPR011990 GO:0005515
Tsu04g02638 672 Pfam Tetratricopeptide repeat 386 461 - -
Tsu04g02638 672 Pfam Tetratricopeptide repeat 191 249 - -
Tsu04g02638 672 Pfam Tetratricopeptide repeat 556 620 - -
Tsu04g02638 672 Coils Coil 485 505 - -
Tsu04g02638 672 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 671 - -
Tsu04g02638 672 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Tsu04g02638 672 Pfam Tetratricopeptide repeat 265 293 IPR019734 GO:0005515
Tsu04g02638 672 MobiDBLite consensus disorder prediction 52 69 - -
Tsu04g02638 672 Pfam Tetratricopeptide repeat 476 504 IPR019734 GO:0005515
Tsu04g02638 672 MobiDBLite consensus disorder prediction 118 132 - -
Tsu04g02638 672 Gene3D Tetratricopeptide repeat domain 374 548 IPR011990 GO:0005515
Tsu04g02638 672 MobiDBLite consensus disorder prediction 133 166 - -
Tsu04g02638 672 SMART tpr_5 220 253 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 387 420 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 513 546 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 429 462 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 597 630 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 263 296 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 305 338 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 555 588 IPR019734 GO:0005515
Tsu04g02638 672 SMART tpr_5 472 505 IPR019734 GO:0005515
Tsu04g02638 672 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Tsu04g02638 672 Gene3D Tetratricopeptide repeat domain 265 373 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02638 Tsu-Chr4 29811195 29813706 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02638 - - gmx:100813461 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02638 04 29811195 29813706 Tsu03g02225 03 24259521 24263504 ECH
Tsu04g02638 04 29811195 29813706 Tsu04g02638 04 29811195 29813706 ECH
Tsu04g02638 04 29811195 29813706 Tsu03g02225 03 24259521 24263504 PCT