Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02225 ATGCCGGGAATTGTTACAAAAGGGGTTCATGATGAAGGGGGAGGTAATGGGGTGAATGGGAACCACTCGCCGGCTAAGGAAACTGTAACTACAATCATGTCTCCGAGGAGTTCAATGAGTTCGCAGAGACGTCAAAGTGCTGGTCCTAATTTACCGGTGGATGAGGTGGTTGAGCCTTCAATCGAGCAGTTGTATGAAAATGTGTGTGACATGCAGAGTTCTGATCAGTCTCCTTCAAGGCAAAGTTTTGGATCTGATGGTGATGAGTCTAGAATTGATTCGGAATTGCACCATCTAGTTGGAGGGCGAATGAGGGAGTTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGAGAAGGCCGGGAGAGAGTTCTAGTGGTGAAACATCTTCTGGAATTGGTAGTTTATCCACTGGTAAGAAGTTGGATAAGGTGGCTGTGGTTCGATCTGGTAGTAGAAGTCCAGTTTCCTCAGAAAAATCCGTCAAAGGATTGAATTCTCCGACGGGCTCTGACACttcaccaaaatcaaaacccaaagGAACTGACAGTTCACCAACAACAAAACCCAAAGGAAAAAGTCCTGCAAAACCTCCTCTACAGAAAAAGAATGGTAGTCCTCTGAGAAAACAAACTAGCGGAGTTAATGGCGTGAAGAATTCAAAGAATTCTCCTTTGAGAAAGTCAGTTTCACAGAATCGCATTGACAATTCGGTTGATTCAGGATTAGATAGACCAGATCGGGCACCGATATTGCTAAAGCAAGCAAGAGATCTTATGTCATCAGGAGATAATCCACACAAAGCTCTTGAATTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGATAATGGGAAACCGAGTTTGGAACTGGTCATGTGCTTACATGTTACAGCAGCAATATATTGCTGCTTGGGTCAATACAACGAGGCAATTCCAATGCTTGAGCGTTCGATTGAGATTCCCGATACCGAGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGTTGGGCCAACTTGAGAATTCAATTAATTGCTACACCGCTGGTTTTGAAGTCCAGAGAGGGATTTTGGGAGAAAAGGACCCAAGAGTTGGTGAAACTTGTCGGTATTTGGCCGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGAGACTCTGTCAAATGGCTCTTGACATTCATAGAGAAAATAGTTCAGCTCCATCGATTGAAGAGGCAGCCGATAGGAGGCTTATGGGCCTTATATGTGAAACAAAGGGGAATCATGAGGCAGCTCTTGAACACCTTGTTTTAGCCAGCATGGCAATGGTAGAAAATGGTCAGGAAGTAGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGATATGATGAGGCTGTCTTTGCATATGAAAAAGCTCTAACTGTTTTCAAGACCAACAAAGGAGAAAATCATCCAACAGTGGGATCAGTCTTTGTACGTTTGGCCGACTTGTATAACAGGATAGGGAAGATAAGGGAATCAAAATCATATTGCGAGAGTGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCCAGCGGTCTTACGAATCTATCAACCATCTATGAGTCAATGAATGAGGTTGAACAGGCACTCAAGTTACTGCAGAAAGCACTGGAGATATATAATGATGCCCCTGGTCAGCAAGGCACAATAGCAGGAATTGAAGCTCAGATAGGGGTCATGTACTACACGTTGGGAAACTACTCTGAATCTTACAACACTTTAAAAAATGCTATTTCGAAGCTTCGTTCTATTGGAGAGAAGAAATCATCCTTTTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGAGTTATGCCTTAAGTGAGGCTATAGTATTATTTGAGGAAGCAAAGAGTATTTTGGAACAGGAGTTGGGACCTTATCACCCTGACACTCTTGGAGTATATAGTAATCTTGCAGGCACATATGATGCAATTGGCAGGCTTGATGATGCAATTCAAATTTTGGAGCATGTTGTTAGTATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGACGATGAGAAGAGAAGGTTGAGTGAATTATTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGAAATGCTCGCACTTTAAACAACCTTGTTATCAAGGCCTGA 2262 0.4275 MPGIVTKGVHDEGGGNGVNGNHSPAKETVTTIMSPRSSMSSQRRQSAGPNLPVDEVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVERRPGESSSGETSSGIGSLSTGKKLDKVAVVRSGSRSPVSSEKSVKGLNSPTGSDTSPKSKPKGTDSSPTTKPKGKSPAKPPLQKKNGSPLRKQTSGVNGVKNSKNSPLRKSVSQNRIDNSVDSGLDRPDRAPILLKQARDLMSSGDNPHKALELALQAMKLFEKFDNGKPSLELVMCLHVTAAIYCCLGQYNEAIPMLERSIEIPDTEESQQHALAKFAGHMQLGDTYAMLGQLENSINCYTAGFEVQRGILGEKDPRVGETCRYLAEANVQALQFNEAERLCQMALDIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVENGQEVEVASVDCSIGDTYLSLSRYDEAVFAYEKALTVFKTNKGENHPTVGSVFVRLADLYNRIGKIRESKSYCESALKIYENPMPGVTPEEIASGLTNLSTIYESMNEVEQALKLLQKALEIYNDAPGQQGTIAGIEAQIGVMYYTLGNYSESYNTLKNAISKLRSIGEKKSSFFGIALNQMGLACVQSYALSEAIVLFEEAKSILEQELGPYHPDTLGVYSNLAGTYDAIGRLDDAIQILEHVVSMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKVRSLENLFDGNARTLNNLVIKA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02225 753 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Tsu03g02225 753 Gene3D Tetratricopeptide repeat domain 336 446 IPR011990 GO:0005515
Tsu03g02225 753 Gene3D Tetratricopeptide repeat domain 227 335 IPR011990 GO:0005515
Tsu03g02225 753 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Tsu03g02225 753 Coils Coil 557 577 - -
Tsu03g02225 753 Pfam MalT-like TPR region 389 578 IPR041617 -
Tsu03g02225 753 MobiDBLite consensus disorder prediction 150 190 - -
Tsu03g02225 753 MobiDBLite consensus disorder prediction 21 48 - -
Tsu03g02225 753 MobiDBLite consensus disorder prediction 1 247 - -
Tsu03g02225 753 Gene3D Tetratricopeptide repeat domain 447 629 IPR011990 GO:0005515
Tsu03g02225 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 742 - -
Tsu03g02225 753 SUPERFAMILY TPR-like 252 412 IPR011990 GO:0005515
Tsu03g02225 753 MobiDBLite consensus disorder prediction 204 238 - -
Tsu03g02225 753 Gene3D Tetratricopeptide repeat domain 642 738 IPR011990 GO:0005515
Tsu03g02225 753 Pfam Tetratricopeptide repeat 628 701 - -
Tsu03g02225 753 Pfam Tetratricopeptide repeat 250 321 - -
Tsu03g02225 753 SUPERFAMILY TPR-like 463 698 IPR011990 GO:0005515
Tsu03g02225 753 SMART tpr_5 627 660 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 292 325 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 585 618 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 669 702 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 459 492 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 377 410 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 335 368 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 419 452 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 544 577 IPR019734 GO:0005515
Tsu03g02225 753 SMART tpr_5 501 534 IPR019734 GO:0005515
Tsu03g02225 753 Coils Coil 710 730 - -
Tsu03g02225 753 MobiDBLite consensus disorder prediction 86 122 - -
Tsu03g02225 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 742 - -
Tsu03g02225 753 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02225 Tsu-Chr3 24259521 24263504 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02225 - - mtr:MTR_3g077950 1166.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02638 04 29811195 29813706 Tsu03g02225 03 24259521 24263504 ECH
Tsu03g02225 03 24259521 24263504 Tsu03g02225 03 24259521 24263504 ECH
Tsu04g02638 04 29811195 29813706 Tsu03g02225 03 24259521 24263504 PCT