Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02606 atgaaggaaacAATAAGATACTTAGCAGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAACAAGTCACTCAACATTGCTCTTTTCTCCCTTCAAATCTAACTGCTCTCATCACTGGTGCCACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAAAAAGGAGTGAGAATTGTGATTGGTGCTAGAGACATGAAAAAGGCTATGAAAGTTAGAGAGAAAATTCAAGAGGAGAGTCCTAATGCTGAAGTTATTCTATTGGAGATTGATCTTAGTTCTCTTGCTTCTGTTAAGAGATTTTGTTCAGAGTTTTTAGCTTTAGATTTGCCTCTTAATATTctcatAAACAATGCTGGAGTGTACTCTCAAGATCTGGAATTCTCTGAAGAGAAAATTGAATTGACATTTGCTACAAATTATTTAGGacattttttgttgacaaaaatgTTACTAGAGAAAATGATAGATACTGCAAACAAGACAGGAATTCAAGGAAGAATAATAAATGTTTCTTCAGTAATTCATAGTTGGGTGAAAAGATCTTGCTTTAGTTTCAAAGACATGCTCAGTGGAAAAAATTACAATGGGACACGTGCATATGCTCAATCAAAATTAGCTATGATTCTGCATGTGAAGGAAATGGCTAGACAACTAAAGGCAAGGAATGCAAGAGTAACTATTAATGCAGTGCATCCAGGCATTGTGAGGACAGGAATTATAAGAGCACATAAGGGCTTAATACAGGATTCCTTCTTTTTCATTGCATCAAAGCTGCTCAAAACAATATCTCAGGGTGCATCAACGACATGTTATGTTGCTCTAAGCCAACAAATAGAAGGGGTGAGTGGGAAATACTTTACCGATTGCAATGAAAGTAACTGCTCAAGTTTTGCAAAGGACGAATCAGAAGCTAAAAAACTATGGAACAATACAAATACCTTACTTCACAAACGCCTAAGGGCATGTTTGGATTGGCGGTGA 996 0.3604 MKETIRYLAGIAGPSGFGSNSTAEQVTQHCSFLPSNLTALITGATSGIGAETARVLAKKGVRIVIGARDMKKAMKVREKIQEESPNAEVILLEIDLSSLASVKRFCSEFLALDLPLNILINNAGVYSQDLEFSEEKIELTFATNYLGHFLLTKMLLEKMIDTANKTGIQGRIINVSSVIHSWVKRSCFSFKDMLSGKNYNGTRAYAQSKLAMILHVKEMARQLKARNARVTINAVHPGIVRTGIIRAHKGLIQDSFFFIASKLLKTISQGASTTCYVALSQQIEGVSGKYFTDCNESNCSSFAKDESEAKKLWNNTNTLLHKRLRACLDWR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02606 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Tsu04g02606 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Tsu04g02606 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Tsu04g02606 331 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Tsu04g02606 331 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
Tsu04g02606 331 CDD retinol-DH_like_SDR_c_like 38 313 - -
Tsu04g02606 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 297 IPR036291 -
Tsu04g02606 331 Gene3D - 33 325 - -
Tsu04g02606 331 Pfam short chain dehydrogenase 38 179 IPR002347 -
Tsu04g02606 331 Pfam short chain dehydrogenase 196 245 IPR002347 -
Tsu04g02606 331 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Tsu04g02606 331 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Tsu04g02606 331 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Tsu04g02606 331 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Tsu04g02606 331 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02606 Tsu-Chr4 29421441 29424444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02606 17 293 Acyl Lipid Metabolism Gene Families AT3G46170 26.644 4.61e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02606 - K11153 gmx:100819058 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02606 04 29421441 29424444 Tsu04g02606 04 29421441 29424444 ECH
Tsu04g02606 04 29421441 29424444 Tsu03g02278 03 25480058 25484125 PCT